Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04092 ATGGCAGGAATGCTTCCCGGAGTTGAATCTGCTAGAAGAAGACGTGTCCATAAGGCTGGAGGTTTTTCCGATTCACCATCTTTAGCTTCTAATAACAGACGCTCTTCTTTCTGTTTGTATTCAACTAACTCTGAATCTCGTCTTTCTTCGTCTTCTTCAATGACACAGCAAGATGAGGATATGGTAGGAGCAGCAAGAGAAGCTAAACAAAGATTGGATGATAAATTCAGATCACAAAGGGTATCTGAAAACACAAGGAAAAAGAACATGAAGTGTGTGGAGGGTAGAAAAGAAAGCATAGAGGAGTTACAAATTGAGGTGTATGGTTCAAAGAAAAGTGGTCCAAGGAAGTTTAGCTGGAGCAAATTGAGCTGGGAAGCATCAGAACAAGAGGATTGTGCTGTGTGTTTGGAATCATTTAAGATTGGAGAGAAATTGATTCCTCTACCTTGTGCACACAAGTTTCATTCTACATGCTTGAAACCTTGGTTGGAAAATAATACACACTGTCCATGCTGTAGAACTACCATTCTTTCCTTCTAG 543 0.4015 MAGMLPGVESARRRRVHKAGGFSDSPSLASNNRRSSFCLYSTNSESRLSSSSSMTQQDEDMVGAAREAKQRLDDKFRSQRVSENTRKKNMKCVEGRKESIEELQIEVYGSKKSGPRKFSWSKLSWEASEQEDCAVCLESFKIGEKLIPLPCAHKFHSTCLKPWLENNTHCPCCRTTILSF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04092 180 ProSiteProfiles Zinc finger RING-type profile. 133 174 IPR001841 -
Vifa1g04092 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 179 IPR013083 -
Vifa1g04092 180 SMART ring_2 133 173 IPR001841 -
Vifa1g04092 180 CDD RING-H2_PA-TM-RING 132 174 - -
Vifa1g04092 180 MobiDBLite consensus disorder prediction 62 90 - -
Vifa1g04092 180 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g04092 180 SUPERFAMILY RING/U-box 122 178 - -
Vifa1g04092 180 FunFam Zinc finger family protein 107 179 - -
Vifa1g04092 180 Pfam Ring finger domain 132 174 IPR001841 -
Vifa1g04092 180 PANTHER SI:CH211-59O9.10 42 179 - -
Vifa1g04092 180 MobiDBLite consensus disorder prediction 47 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04092 Vifa-Chr1 629627964 629628876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04092 128 177 C3H Transcription Factor Family AT1G49850 60.000 1.15e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04092 - - gmx:100527583 238.039