Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04091 ATGGCAGGAATGCTTCCCGGAGTTGAATCTGCTAGAAGAAGACGTGTCCATAAGGCTGGAGGTTTTTCCGATTCACCATCTTTAGCTTCTAATAACAGACGCTCTTCTTTCTGTTTGTATTCAACTAACTCTGAATCTCGTCTTTCTTCGTCTTCTTCAATGCAAAGGAACATGTTATACCAGACACAGCAAGATGAGGATATGGTAGGAGCAGCAAGAGAAGCTAAACAAAGATTGGATGATAAATTCAGATCACAAAGGGTATCTGAAAACACAAGGAAAAAGAACATGAAGTGTGTGGAGGGTAGAAAAGAAAGCATAGAGGAGTTACAAATTGAGGTGTATGGTTCAAAGAAAAGTGGTCCAAGGAAGTTTAGCTGGAGCAAATTGAGCTGGGAAGCATCAGAACAAGAGGATTGTGCTGTGTGTTTGGAATCATTTAAGATTGGAGAGAAATTGATTCCTCTACCTTGTGCACACAAGTTTCATTCTACATGCTTGAAACCTTGGTTGGAAAATAATACACACTGTCCATGCTGTAGAACTACCATTCTTTCCTTCTAG 564 0.4007 MAGMLPGVESARRRRVHKAGGFSDSPSLASNNRRSSFCLYSTNSESRLSSSSSMQRNMLYQTQQDEDMVGAAREAKQRLDDKFRSQRVSENTRKKNMKCVEGRKESIEELQIEVYGSKKSGPRKFSWSKLSWEASEQEDCAVCLESFKIGEKLIPLPCAHKFHSTCLKPWLENNTHCPCCRTTILSF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04091 187 SMART ring_2 140 180 IPR001841 -
Vifa1g04091 187 SUPERFAMILY RING/U-box 129 185 - -
Vifa1g04091 187 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g04091 187 Pfam Ring finger domain 139 181 IPR001841 -
Vifa1g04091 187 PANTHER SI:CH211-59O9.10 45 186 - -
Vifa1g04091 187 FunFam Zinc finger family protein 114 186 - -
Vifa1g04091 187 CDD RING-H2_PA-TM-RING 139 181 - -
Vifa1g04091 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 186 IPR013083 -
Vifa1g04091 187 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04091 Vifa-Chr1 629627964 629628876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04091 135 184 C3H Transcription Factor Family AT1G49850 60.000 1.11e-16 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04091 - - gmx:100527583 256.144