Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04082 ATGGTTGTGGAGAATCAAAGGGGTTGTTTGAGGGATGAAGATGAGGTCATTGACCGTTTTCCTGTCGGTATGCGTGTGCTTGCCGTTGATGACAACCCAACTTGTCTCATGGTTTTGGATAAACTCCTTCGTCAATGCAAATATCATGTTACTACATCTACAAATGCAATTGATGCGCTGAGAATGTTGAGGAGAAACAGAAATAACTTTGACTTGGTTATTAGTGATGTGGATATGCCTGACATGGATGGGTTTAAGCTTCTTGAGTTGGTGGGACTTGAAATGGACTTACCTGTAATCATGTTGTCGGGACACAGTGATACAAATATGGTGTTCAAAGGGATTACACACGGTGCATGTGACTATCTGCTGAAACCTGTTCGACTTGAAGAGCTCAAGAACATATGGCAACATGTTTTTCGAAAGAAAAAAACCTATTCCAATTATCAAAATAAGGCTTCCAATGAGGATAGGGTCGCTAATATTTTGGGGGGAAATAGTCAAAACATATTGGAAAACAATGGTGATCAGAATAAAAGGATCAGTAAAAGAAGGAAGGACCGAGACGAGGAGGGAGAAGAAGATGAAGAAGGTGAAGGGACTGGAGATGAGGATGACCCGTCATCACAAAAGAAACCCCGCGTGGTTTGGTCTGTTGATCTGCATAAGAAATTTGTCTATGCTGTTAACCAACTCGGCTTGGAGAAGGCTGTTCCAAAGAAAATACTTGATCTGATGAATGTTGAAGGGCTTACTAGGGAAAATGTGGCAAGCCATCTGCAGAAATTCAGACTATATCTGAAAAAGGCAGCCCATCAAGCTAACATGATTGCTGCATTCGGTGGTGGTAACGATTCATACCTTCGGATGAGTGGAATAGATGGATATGCAGATATTTGCACCTCGCCTGGATCTAGAAGGATCTCGAGTACCACCTTGCCATCATATTCATCAAGTGGACTTTTCGGTAGGCTGAATTCTCCAGCCAGCTGTAACATGAGAGGAATAAGTCCTTCAACACTGATTCGGCCTGTTCAGAGTCAAAACATCAACAGCTCGTTGAGCAAACTTGGAAACTTCCAGTCATCATCCATGATATTTCCTGCAAATCAAAGCTCAAACTTATTACACTGTATTCCAACCGAGCTTAACCCAGTAGATTCCACTGGATTTAGAGTTGCATCCGGCTTCCAGGATAGTAGGGCTACTAACTGTTCTCTACAAGAGTCAAACCATCATTTATTGTTCCAAGGAAATTCACGACCGATACACAATGCAGGGACATATAGAAATCAATCTTCTCTTGGTTCTGCTTCTTTGGGAAACACAAACATCGACATTTGTGGTTCTTCTAATCAGTGTACTGAAAACTTGAAAAGTGAAGCGTTGCCTAAGTTTCCTGCCAGTTCTTTGCCGGTATGCAGGTCTTTCAATACCAACCAAATGCCTCCTACTAGCATTACTGCTTTTAACCAAATACCTCCGATTGGTAATAGTCCAGTTAACTTTTCATCTAGAGAAGCAATCAATGTTACTTTGAAGGATGCCAGAGATGTTTTGACGAGGTGCCAAGAAGGCGGCTTTATTGGAAATATTATGCAGCCTTCTGGTTATGCTCCGCAACAAAGGTGGGAAGAACATAAACTGGATTACAGCGAAAACATGAGCCGTCCCTTCATAAATCAAGAGCAAAATGAGATGACATTAATCGATGGAGAAATGGGATTTTATGATGCTTACCCTATTGGATCATGTATTTGA 1761 0.4157 MVVENQRGCLRDEDEVIDRFPVGMRVLAVDDNPTCLMVLDKLLRQCKYHVTTSTNAIDALRMLRRNRNNFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSGHSDTNMVFKGITHGACDYLLKPVRLEELKNIWQHVFRKKKTYSNYQNKASNEDRVANILGGNSQNILENNGDQNKRISKRRKDRDEEGEEDEEGEGTGDEDDPSSQKKPRVVWSVDLHKKFVYAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKKAAHQANMIAAFGGGNDSYLRMSGIDGYADICTSPGSRRISSTTLPSYSSSGLFGRLNSPASCNMRGISPSTLIRPVQSQNINSSLSKLGNFQSSSMIFPANQSSNLLHCIPTELNPVDSTGFRVASGFQDSRATNCSLQESNHHLLFQGNSRPIHNAGTYRNQSSLGSASLGNTNIDICGSSNQCTENLKSEALPKFPASSLPVCRSFNTNQMPPTSITAFNQIPPIGNSPVNFSSREAINVTLKDARDVLTRCQEGGFIGNIMQPSGYAPQQRWEEHKLDYSENMSRPFINQEQNEMTLIDGEMGFYDAYPIGSCI 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04082 586 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 363 IPR045279 GO:0009736
Vifa1g04082 586 FunFam Two-component response regulator 208 271 - -
Vifa1g04082 586 Gene3D - 210 270 - -
Vifa1g04082 586 PIRSF RR_ARR_type-B 5 579 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vifa1g04082 586 MobiDBLite consensus disorder prediction 177 191 - -
Vifa1g04082 586 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Vifa1g04082 586 Gene3D - 24 209 - -
Vifa1g04082 586 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Vifa1g04082 586 CDD REC_typeB_ARR-like 26 140 - -
Vifa1g04082 586 MobiDBLite consensus disorder prediction 164 212 - -
Vifa1g04082 586 Pfam Myb-like DNA-binding domain 214 262 IPR001005 -
Vifa1g04082 586 SUPERFAMILY CheY-like 23 151 IPR011006 -
Vifa1g04082 586 SUPERFAMILY Homeodomain-like 210 269 IPR009057 -
Vifa1g04082 586 SMART REC_2 24 136 IPR001789 GO:0000160
Vifa1g04082 586 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04082 Vifa-Chr1 628558478 628561094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04082 15 383 Response Regulator Gene Family AT2G25180 52.660 1.11e-112 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifa1g04082 Response_reg 1.2e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04082 K14491 - psat:127085782 1015.76