Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04065 ATGACTTTGGACGCACCTCCTGAAGACGACCATCCCAAACGCCGTGCGTCTGATCATCCAGACTCACCGGTGTTATCGAAGAAGCGAGAAGTGATCGGCGAAATCGCCAATCTCAACATTCAGAGCCCAACGACAAAGGAAGAAACGACCGAGGAAATCAAACAGCCATCTCCTTGTTCCATCTACAGATATCTTCGTGACATGGAGATGGATGAGAATAAGAGGCCATTAGGTAATTACATTGGGACAGTTCAGAAAAGGATGACAAATGATATGCGTGAAATTCTGATTGATTGGTTAGTGGAGGTTACTGAGGATTTCAAGCTTATTTCCGATACTCTTTATATCGGCGTTTCTTACATCGATCGTTTCCTCTCTGTTCGTCCTCTCCACAAAAACTACCTCCAGCTTCTCGGAATTACTGCCATCCTCATTGCCTCGAAGCAAGCTGACATTTCTTCTCCACCGGGGGAACGCTTGTGCTTTATGACGGATAATACTTACACCATCTCAGAGGTTATACAGATGGAGAAGGACGTCCTTCAATTTTTGAACTCTGATTTATGCTATCCCACCTCTAGAAATTTTCTCAGAATTTTCATCGGAATTTTTCACAGTCATACTAGTGCTCTGCGTTGTACCAAGCCATTCGATTACTTGGTCGCTAAGAAATATGACCAGCAATTGGAATTCCTGGCTTGCTATCTTCTGGAGTTATGCCTATTATCATCCAAATGCATCAAGTTTTTACCTTCCATAGCTGCTGCTTCTGCCATATTTCTGTCCAGGTTTATACTTGAACCAAAGGATCACCCTTGGACTCAAGAGTTAGAATGCCGATCAGGATATAAGGCAAGTGACCTGCAGGAATGTGTCCTTGCAATACATGATGTGCACTCCAGTATCTCAGAGTGGCATGTACAAGCAGTACGGGAAAAGTACATGAAATCCAAGTTTCTGAGTATGGCATCTTTGACTGCTGGGGAAATTCCTGCAAATTATTTTGATCCTATTGATCAATAA 1023 0.4301 MTLDAPPEDDHPKRRASDHPDSPVLSKKREVIGEIANLNIQSPTTKEETTEEIKQPSPCSIYRYLRDMEMDENKRPLGNYIGTVQKRMTNDMREILIDWLVEVTEDFKLISDTLYIGVSYIDRFLSVRPLHKNYLQLLGITAILIASKQADISSPPGERLCFMTDNTYTISEVIQMEKDVLQFLNSDLCYPTSRNFLRIFIGIFHSHTSALRCTKPFDYLVAKKYDQQLEFLACYLLELCLLSSKCIKFLPSIAAASAIFLSRFILEPKDHPWTQELECRSGYKASDLQECVLAIHDVHSSISEWHVQAVREKYMKSKFLSMASLTAGEIPANYFDPIDQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04065 340 Gene3D - 74 189 - -
Vifa1g04065 340 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g04065 340 SUPERFAMILY Cyclin-like 219 326 IPR036915 -
Vifa1g04065 340 Pfam Cyclin, C-terminal domain 191 325 IPR004367 -
Vifa1g04065 340 Gene3D - 61 324 - -
Vifa1g04065 340 SMART cyclin_7 214 297 IPR013763 -
Vifa1g04065 340 SMART cyclin_7 98 182 IPR013763 -
Vifa1g04065 340 SMART Cyclin_C_2 191 328 IPR004367 -
Vifa1g04065 340 Pfam Cyclin, N-terminal domain 61 189 IPR006671 -
Vifa1g04065 340 PANTHER CYCLINS 57 314 IPR039361 -
Vifa1g04065 340 SUPERFAMILY Cyclin-like 60 188 IPR036915 -
Vifa1g04065 340 ProSitePatterns Cyclins signature. 93 124 IPR006671 -
Vifa1g04065 340 FunFam G2/mitotic-specific cyclin 76 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04065 Vifa-Chr1 625241818 625243734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04065 13 339 Core Cell Cycle Gene Families AT5G43080 41.573 2.06e-84 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04065 K06627 - pvy:116142168 276.944