Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04060 ATGCTTTCCCGTAAACTCTTTCAATCTCAGCCGTCCACGTCATCACCACATCTTCAACCTCACCACCACCACCGTCACCGCCACCACATTCTTATTCCTCTCCTCGCCGTAACAGCCGTCTTATTAACCATCCTCCTCTTCTTCATCTTCCTCTTCCGCCGCACCCGAAAAAAACGCACCGCTCCATTCTGCTTCCCCGACGATAATCCACCGCACCGGTTCTCCTACTCCCTCCTCCGCCGCGCTACAAACTCCTTCTCAGTTCCACTCGGTCACGGCGGCTTTGGCACCGTCTTCTCCGGTACTCTCTCTTCCAAACCGATCGCTGTTAAGCTCATGGACAGTTCCTCTCAGCAAGGCGAACGGGAGTTTCACAACGAGCTCTTCTTCTCTTCGAAGCTTCGTTCTCTGTATATAGTTCCTCCGTTAGGGTTTTCGTCTGACCCAAAACGGTGCCGTTTTCTACTCGTTTATCCTCTGATGCAAAACGGTAATCTTCAAGACGCGCTTTTGAAGCGTAAGTGCTCTGAACTTTTTAATTGGAGTAAAAGGTTTGAAATTGTGTTGGATATTGCTAAGGGACTTTGTTATCTTCACTCTTTTGATCCTCCTGTTATACATGGTGATATAAAGCCTAGTAATATTCTTTTAGATTGTGAGTTTGCTGCTAAGATTGGAGATTTTGGACTTGCGCGGTTGAAATCGGAGCCGGTTAGGGTTGATGTTGAGCTTTTGGATATTGATAGTGAGGATGAAATGAAGAAAGGGGATGGAGATTTGGAGTGTGGTGGTGTTAGGGTTTTGATTGATGATTGTGGATCTGTGGAAAGTGTTCATACTACTTTTTTTGAAGATGGTACTAGTTTGGGTTTGGAGCAATCTCCGATGGCTTCTCCTATGACGATGGCTTTGGCAGCGTCGCCGGGGTTTGATAAGGCTAGTGTGAAGAGTGAGAAGGATGTTGTTAGTGTTGAGAATGGTAAGAGGAATGGGAAAGGGGTAGCGGGTAGTCCGGTTAGGGATTGGTGGTGGAAACATGAGAATGAGGTTGTGGGTTTGACGCCGGTTGGGGAAGGTAAGAAGGTGAAGGATTATGTGATGGATTGGATCGGAAGGGAAGTGAAAAGTGAAAAGAGTGAATTAGTGGAAGAGAAGATTGAGAAGATGAAGATGGAGAAGAACAAGAACAAGAAGCATAAATTGGAATGGTGGGAATCAATGGATGAGGAAAATGTTTGCGGAGTGATGAAGGATAAGAGAAAGTCGGTTAGGGAATGGTGGAAGGAGGAGTATTGTGAAGAGGCTGCAAAGGAGAAAAAAAAGAAGAATAAGAATAAGAATAAGAAGAAAAAGGGTGTAGAAAATGATGATGGCATTAGCGTTGATGATAATTGGTGGATGAGTGATGATACATTGTATGGGGATAGAAAGAAGGAAAAGAGAAGAAGTAGGAATAATCGCGGTAGTGTCGATTGGTGGTTAGACGGGTTCAGTGGCGAGTTATGGAGAGCACGTAGGAATAGTTTTGATTCAGCAAGTGGAGACATTCCAAAGAGTGGTGGTGTGAGTAGTACACCAAGTATGAGAGGAACCATTTGTTATGTTGCTCCCGAGTATGGCTATGGCGATGATGTCTCCGAAAAGTGTGATGTTTATAGCTTTGGGATCTTGTTGCTTGTTATCATTTCTGGGAGGCGCCCACTTCAAGTAACCGGTTCACCGATGTCAGAGTTTCAAAGAGCAAATCTTTTGTCATGGGCACGCCATTGTGCAAGAAATGGTAAGCTTATTGAGTTGGTTGATGAATCTATTCAGTCATTGAATAAGGACCAGGCTATGATCTGCATCAAAGTGGCTTTGCTTTGTTTGCTTAAATCACCTACTCGGCGTCCTTCAATGAAGGAGGTTGTCGGGATGCTAAGCGGAGAGATGGAACCACCCCAGTTGCCTGTTGAGTATTCACCTTCAACCCCTTCTCGCTTCCCTTTCAAATGTAGGAAGAAAGGCCAAGGCCGGTAA 2019 0.4517 MLSRKLFQSQPSTSSPHLQPHHHHRHRHHILIPLLAVTAVLLTILLFFIFLFRRTRKKRTAPFCFPDDNPPHRFSYSLLRRATNSFSVPLGHGGFGTVFSGTLSSKPIAVKLMDSSSQQGEREFHNELFFSSKLRSLYIVPPLGFSSDPKRCRFLLVYPLMQNGNLQDALLKRKCSELFNWSKRFEIVLDIAKGLCYLHSFDPPVIHGDIKPSNILLDCEFAAKIGDFGLARLKSEPVRVDVELLDIDSEDEMKKGDGDLECGGVRVLIDDCGSVESVHTTFFEDGTSLGLEQSPMASPMTMALAASPGFDKASVKSEKDVVSVENGKRNGKGVAGSPVRDWWWKHENEVVGLTPVGEGKKVKDYVMDWIGREVKSEKSELVEEKIEKMKMEKNKNKKHKLEWWESMDEENVCGVMKDKRKSVREWWKEEYCEEAAKEKKKKNKNKNKKKKGVENDDGISVDDNWWMSDDTLYGDRKKEKRRSRNNRGSVDWWLDGFSGELWRARRNSFDSASGDIPKSGGVSSTPSMRGTICYVAPEYGYGDDVSEKCDVYSFGILLLVIISGRRPLQVTGSPMSEFQRANLLSWARHCARNGKLIELVDESIQSLNKDQAMICIKVALLCLLKSPTRRPSMKEVVGMLSGEMEPPQLPVEYSPSTPSRFPFKCRKKGQGR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04060 672 Gene3D Transferase(Phosphotransferase) domain 1 161 255 - -
Vifa1g04060 672 Gene3D Transferase(Phosphotransferase) domain 1 507 648 - -
Vifa1g04060 672 Coils Coil 374 402 - -
Vifa1g04060 672 Coils Coil 428 456 - -
Vifa1g04060 672 SUPERFAMILY Protein kinase-like (PK-like) 66 658 IPR011009 -
Vifa1g04060 672 Pfam Protein tyrosine and serine/threonine kinase 525 639 IPR001245 GO:0004672|GO:0006468
Vifa1g04060 672 Pfam Protein tyrosine and serine/threonine kinase 89 234 IPR001245 GO:0004672|GO:0006468
Vifa1g04060 672 PANTHER OS07G0586332 PROTEIN 1 668 IPR044576 -
Vifa1g04060 672 MobiDBLite consensus disorder prediction 647 672 - -
Vifa1g04060 672 Gene3D Phosphorylase Kinase; domain 1 67 159 - -
Vifa1g04060 672 ProSiteProfiles Protein kinase domain profile. 84 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04060 672 ProSitePatterns Protein kinases ATP-binding region signature. 90 111 IPR017441 GO:0005524
Vifa1g04060 672 MobiDBLite consensus disorder prediction 1 17 - -
Vifa1g04060 672 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g04060 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vifa1g04060 672 SMART serkin_6 84 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04060 Vifa-Chr1 623913726 623915744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04060 525 645 Receptor kinase-like Gene Family AT2G14510 31.452 9.49e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vifa1g04060 PK_Tyr_Ser-Thr 2.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04060 - - lja:Lj2g3v0473820.1 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04060 1 623913726 623915744 Vifa3g03030 3 863151861 863153561 PCT