Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04052 ATGGCTTACTCTAAAATTCTCCTTTTCTATATATTTGTTGGGTTCATCTGTTTTGCAACAATAAATGCACAAGATAATCGTCCTTTCATGAATATTCTTTGTTCCGAAAACAGAACCACAACCAATAGCACCTTCCATGTCAATCTCATGACCCTCCTCTCATCTTTGTCATCAAAATCCATTGGCAACACGGAATTCTACAACACCACAGGCACTGCCATAAACTCCTCCGACTCTGACGCTGCTTATGGATTGTTCATGTGCAGGGGGGATGTACCCTCCCAGCTCTGTCACGAATGCGTACTTAATGCAGCCCAAACACTATCCTCTAACTCAAAGTGCTATTTGTCAAAACGAGCGGTGATTTGGTACGACGACTGCATGATTCAATACTCCAACAACTCTTTCTTTTCCACTGTTTCAAGTGATGGTTTTTTCCTGTTAAACCCCAACAACGTCTCAAACCCGAAAAGCTTCATGCCTTTATTGTCTTTGACTATGAATCAAACTGCAGAAAAAGCAGCAAACAATAACAAGATGTATGCCACAAATGAAGCAAAAGTTTCGAAACTTCAGACACTTTACTGTCTAGCTCAGTGCACGCCAGACTTGTCGCCCAATGATTGCAGAACCTGTCTCAGTGCTGGTATTGATTATCTTCCGCGGTGTTGTGATGGAAAGCAGGGTGGGAGAGTTCTATTTCCTAGCTGTAACGTTAGGTACGAACTATATCCTTTTTATAGATCTAGTAATGCTTCCCCAACAAATCGGCTTGTTCCAGAAACAAATGACTCCAAACAAGACGCAGGTTTTTCAAAAGATCCATTTTATCTTGGTTACAACTGCTCAAGTAGCAACAGTACAATCACTGAGAAAAACTTCAAATTACTTCTCTCTTATATGTCTTCCAACGCCACAAGCAACAAAACATTTTACACAACCAATGTGGATGAAATGGTGTATGGCCTATTCATGTGTCGAGGTGACCTCCCCTCTAGCCTCTGCGGTGAATGCGTGAAAAACGCAACAGATCGAATATACTCCAACTGTCTTTCATCTCAGGAGGGTATAATTTGGTACAGCCACTGCTTGGTTCGCTATTATCAGAGTCTCTTCTCAAACATGGAAACTAGCCCTACGTATAGCCATATTAATATCACCACATACTCCATCTTGGACCAAAACCTCTTCACTAACATATTATCTAATCACTTATCTCAACAAGCGGATGATACAGCAGGTAGTGCTGATAAATATACCACCAACTCGTTAAAATTGAACGATGTACAAACTTTGTATACACTTGAACAATGTACTCCAGATTTGTCTAGTGACGATTGCACTTTGTGTCTAAAAGATATAATCGGTGCATCAATTCCATGGTCATATTTGGGAAGTATTGGAGGAAGAATAATATATCCTAGCTGCAATATCAGGTTTGAATTGTTCCAATTTTACAACCAGGTTGGTGAAGTTCAGCCACCTGTTACTCCTCCATCACGAAATAAAGAGAAATGGAGAATTGTCGCCATCGTTGTCCCTATCGTTATTTTGGTGGTGCTCTTTCTTATTGGCTACTACTATGTTCTAAAGAGAAAGGGAAGAAAAAGTCGTAGAACTATTCTTCGAGAAAATTTTGGTGAAGAAAGTGCCACTTTAGAACCCATGCGATTTGATTGGGTGGTAATTGAAGCAGTAAGTAACAATTTTTCTAAAGATAACTACATTGGCAAAGGTGGATTTGGAAAGGTTTACAAGGGTACTCTTTTGGATGGACGACAAGTCGCTATAAAAAGACTTTCAATAAACTCTAAGCAAGGTGTTGAGGAGTTCAAAAATGAAGTTTTATTGATAGCTAAGCTTCAACATAGAAATCTAGTAACATTTATTGGTTTTTGTCTTGAAGAACACGAGAAAATACTTATTTATGAATTTGTGCCCAACAAGAGTCTTGATTACTTTTTATTTGATTCTCAATGCAAAAAGTCGCTAACTTGGGTTGAACGCTTCAATATAATTGGAGGAATTATTCGGGGAATTCTTTATATGCATGAACTTTCCCGACTTAAAGTTATACATCGCGATCTCAAACCTAGTAATATTTTATTAGATGAAAATATGATTCCTAAAATTTCTGATTTTGGTTTGGCTCGAATTGTTGAAATAAGTCAAGATAAAAGAACTACAAAAAGAATTATTGGGACATACGGTTATATGCCTCCGGAATATGCAATGTTTGGAAAATATTCTGAAAAATCAGATATTTATAGTTTTGGAGTCATGCTTTTAGAGATTATTGCTGGAAGAAAGAATATGAGTTCATCTATGCAATACCAGGATGCTGAAGGGGTTAATGGACTATTGAATCATGTTTGGAGACAATGGAAGGATCAAACACCGTTGAGTATATTGGATCCAAATATTGAAGAGGATTATTCAAAAATTGAAGTAACCAAGTGCATTCAAATTGGTCTACTATGTGTTCAACATAACCCAGATGCTAGACCTTCAATAGTGACAATTGCTTCTTATCTTAGTAGTTATTCAATTGAATTACCAACTCCACAAGAACCTATATTTTTCCACCATGGTAGAACTATTTCAAAATCTCATGCCCAAGAATCAAGTTCAACTAAATCTGGAAATAGTTCGTCTCTATTCTCTTTGAATGAAATGTCTATCAGTAATTTTATTCCTAGATAG 2703 0.374 MAYSKILLFYIFVGFICFATINAQDNRPFMNILCSENRTTTNSTFHVNLMTLLSSLSSKSIGNTEFYNTTGTAINSSDSDAAYGLFMCRGDVPSQLCHECVLNAAQTLSSNSKCYLSKRAVIWYDDCMIQYSNNSFFSTVSSDGFFLLNPNNVSNPKSFMPLLSLTMNQTAEKAANNNKMYATNEAKVSKLQTLYCLAQCTPDLSPNDCRTCLSAGIDYLPRCCDGKQGGRVLFPSCNVRYELYPFYRSSNASPTNRLVPETNDSKQDAGFSKDPFYLGYNCSSSNSTITEKNFKLLLSYMSSNATSNKTFYTTNVDEMVYGLFMCRGDLPSSLCGECVKNATDRIYSNCLSSQEGIIWYSHCLVRYYQSLFSNMETSPTYSHINITTYSILDQNLFTNILSNHLSQQADDTAGSADKYTTNSLKLNDVQTLYTLEQCTPDLSSDDCTLCLKDIIGASIPWSYLGSIGGRIIYPSCNIRFELFQFYNQVGEVQPPVTPPSRNKEKWRIVAIVVPIVILVVLFLIGYYYVLKRKGRKSRRTILRENFGEESATLEPMRFDWVVIEAVSNNFSKDNYIGKGGFGKVYKGTLLDGRQVAIKRLSINSKQGVEEFKNEVLLIAKLQHRNLVTFIGFCLEEHEKILIYEFVPNKSLDYFLFDSQCKKSLTWVERFNIIGGIIRGILYMHELSRLKVIHRDLKPSNILLDENMIPKISDFGLARIVEISQDKRTTKRIIGTYGYMPPEYAMFGKYSEKSDIYSFGVMLLEIIAGRKNMSSSMQYQDAEGVNGLLNHVWRQWKDQTPLSILDPNIEEDYSKIEVTKCIQIGLLCVQHNPDARPSIVTIASYLSSYSIELPTPQEPIFFHHGRTISKSHAQESSSTKSGNSSSLFSLNEMSISNFIPR 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04052 900 Gene3D Phosphorylase Kinase; domain 1 533 645 - -
Vifa1g04052 900 ProSitePatterns Protein kinases ATP-binding region signature. 576 598 IPR017441 GO:0005524
Vifa1g04052 900 ProSiteProfiles Protein kinase domain profile. 570 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04052 900 SUPERFAMILY Protein kinase-like (PK-like) 553 879 IPR011009 -
Vifa1g04052 900 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
Vifa1g04052 900 FunFam cysteine-rich receptor-like protein kinase 10 646 852 - -
Vifa1g04052 900 Pfam Salt stress response/antifungal 34 133 IPR002902 -
Vifa1g04052 900 Pfam Salt stress response/antifungal 288 368 IPR002902 -
Vifa1g04052 900 Pfam Salt stress response/antifungal 153 244 IPR002902 -
Vifa1g04052 900 Pfam Salt stress response/antifungal 401 481 IPR002902 -
Vifa1g04052 900 ProSiteProfiles Gnk2-homologous domain profile. 377 485 IPR002902 -
Vifa1g04052 900 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 324 896 - -
Vifa1g04052 900 FunFam Cysteine-rich receptor-like protein kinase 25 379 485 - -
Vifa1g04052 900 Pfam Protein kinase domain 571 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04052 900 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672|GO:0006468
Vifa1g04052 900 Gene3D Transferase(Phosphotransferase) domain 1 646 854 - -
Vifa1g04052 900 Gene3D - 26 136 IPR038408 -
Vifa1g04052 900 Gene3D - 145 246 IPR038408 -
Vifa1g04052 900 Gene3D - 277 372 IPR038408 -
Vifa1g04052 900 Gene3D - 378 485 IPR038408 -
Vifa1g04052 900 ProSiteProfiles Gnk2-homologous domain profile. 27 136 IPR002902 -
Vifa1g04052 900 FunFam Cysteine-rich receptor-like protein kinase 25 143 246 - -
Vifa1g04052 900 SMART serkin_6 570 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04052 900 ProSiteProfiles Gnk2-homologous domain profile. 272 372 IPR002902 -
Vifa1g04052 900 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 531 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04052 Vifa-Chr1 622318901 622322936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04052 272 900 Receptor kinase-like Gene Family AT4G05200 41.994 3.63e-164 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g04052 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04052 - - gmx:100806048 1014.6