Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04051 ATGGCTTACTCTAAAATTCTCCTTTTCTATATCTTTGTTAGGTTCATCTGTTTTGCAACAATAAATGCACAAGATAATCCTACTTTCTTGTATAACTTTTGTTCTGAAAACGAAACCACCACAGCCAATAGCACATTCCATGTCAATCTCATGACCCTCCTCTCATCTTTGTCATCAAAATCAAATGAGAACACGGAATTCTACAACACCACAGGCACTGCCATAAACTCCTCCGACTCTGACGATGCTTATGGATTGTTCATGTGCAGGGGGGATGTACCCTCCCAGCTCTGTCACGAATGCATAGTTAATGCAACCCAAAAACTATCCTCTGACTCAGACTGCTCTTTGTCTAAACGAGCGGTGATTTGGTACAACGAATGCATGGTTCGATACTCCAACAACTCTTTCTTTTCCACTGTTTATACAAGTCCTGGTATTTCCATGATAAACACCAACAACGTCTCAAACCCGAAAAGCTTCATGCCTTTATTGTCTTTGACTATGAATCAAACTGCAGAAGAAGCAGCAAACAATAACAAGATGTATGCCACAAATGAAGCAAAAGTTTCGAAATTTCAGACACTTTACTGTCTAGCTCAGTGCACGCCAGACTTGTCGCCCAATGATTGCAGAACCTGTCTCAGTGCTGGTATTGGTTTTCTTCCGCGGTGTTGTGATGGAAAGCAGGGTGGGAGAGTTCTATTTCCTAGCTGTAACGTTAGGTACGAACTATATCCTTTTTATAGATCTAGTAATGCTTCCCCAACAAATAGGCTTGTTCCAGAAACAAATGACTCCAAACAAGATGCAGATTTTTCAAAAGATCCATTTTATCTTGGCTACAACTGCTCAAGTAGCAACAGTACAATCACTGAGAAAAACTTCAAATCACTTCTCTCTTATTTGTCTTCCAGTACCACAAGCGGCAGAACATTTTACACAACCAATGTGGAAGACCTGGTGTACGGCCTCTTCATGTGTCGAGGTGACCTTCCCTCTAGCCTCTGCGGTGAATGCGTGAAAAACGCAACAGATCGAATATACTCCAACTGTCTTTCATCTCCGGAGGGTATAATTTGGTACAGCCACTGCTTGGTTCGCTATTCTTATCAGAGTCTCTTCTCAAACATGGAAACTAGCCCTATGTATCGCAATATTAATATCACCACATACTCCATCTCGGACCAAAACCTCTTCACTAACATATTATCTAATCACTTATCTCAACAAGCGGATGATACAGCAGATAGTGCTGATAAATATACGACCAACTCGTTAAAATTGAACGATGTACAAACATTGTATACACTTGAACAATGTACTCCAGATTTGTCTAGTGGCGAATGCTCTTCATGTCTAAAAGATATAATCGGTGAATCAATCCCATGGTCATATTTGGGAAGTATTGGAGGAAGAATAATATATCCTAGCTGCAATCTCAGGTTTGAATTGTTCCAATTTTACAACCAGGTTGGTGAAGCTCAGCCGCCTGGTACTCCTCCATTACCAGGGACTCCTCCATCACGAAATAAAGAGAAATGGAGACTTGTCGCCATCGTTGTCCCTGTCGTTATTTTGGTGGTGCTCTTTCTTATTGGCTACTACTATGTTCTAAAGAGAAAGGGAAGAAAAAGTCGTAGAACCATTCTTCGAGAAAATTTTGGTGAAGAAAGTGCCACTTTAGAACCCATGCGATTTGATTGGGTGGTGATTGAAGCAGTAAGTAACAATTTTTCTAAAGATAACTACATCGGCAAAGGTGGATTTGGAAAGGTTTACAAGGGTACTCTTTTGGATGGACGACAAGTCGCTATAAAAAGACTTTCAATAAACTCTAAGCAAGGTGTTGAGGAGTTCAAAAATGAAGTTTTATTGATAGCTAAGCTTCAACATAGAAATCTAGTAACATTTATTGGTTTTTGTCTTGAAGAACACGAGAAAGTACTTATTTATGAATTTGTGCCCAACAAGAGTCTTGATTACTTTTTATTTGATTCTCAATGCAAAAAGTCGCTAACTTGGGTTGAACGCTTCAATATAATTGGAGGAATTATTCGGGGAATTCTTTATATGCACGAACTTTCCCGACTTAAAGTTATACATCGCGATCTCAAACCTAGTAATATTTTATTAGATGAAAATATGATTCCTAAAATTTCTGATTTTGGTTTGGCTCGAATTGTTGAAATAAGTCAAGATAAAAGAACTACAAAAAGAATTATTGGGACATACGGTTATATGCCTCCGGAATATGCAATGTTTGGAAAATATTCTGAAAAATCAGATATTTATAGTTTTGGAGTCATGCTTTTAGAGATTATTGCTGGAAGAAAGAATATGAGTTCATCTACGCAATACCATGATGCTGAAGGGGTTAATGGACTATTGAATCATGTTTGGAGACAATGGAAGGATCAAACACCGTTGAGTATATTGGATCCAAATATTGAAGATGATTATTCGAAAATTGAAGTAACCAAGTGTATTCAAATTGGTCTATTATGTGTTCAACATAACCCAGATGCTAGACCTTCAATAGTGACAATTACTTCTTATCTTAGTAATTATTCAATTGAATTACCAACTCCACAAGAACCTATATTTTTCCACTATGGTAGAACTATTTCAAAATCTCATGCCCAAGAATCAAGTTCAACTCAATCTGCAAATAATTCGTCTCTATTCTCTTTGAATGAAATGTCTATCAGTAATTTTATTCCTAGATAG 2730 0.3777 MAYSKILLFYIFVRFICFATINAQDNPTFLYNFCSENETTTANSTFHVNLMTLLSSLSSKSNENTEFYNTTGTAINSSDSDDAYGLFMCRGDVPSQLCHECIVNATQKLSSDSDCSLSKRAVIWYNECMVRYSNNSFFSTVYTSPGISMINTNNVSNPKSFMPLLSLTMNQTAEEAANNNKMYATNEAKVSKFQTLYCLAQCTPDLSPNDCRTCLSAGIGFLPRCCDGKQGGRVLFPSCNVRYELYPFYRSSNASPTNRLVPETNDSKQDADFSKDPFYLGYNCSSSNSTITEKNFKSLLSYLSSSTTSGRTFYTTNVEDLVYGLFMCRGDLPSSLCGECVKNATDRIYSNCLSSPEGIIWYSHCLVRYSYQSLFSNMETSPMYRNINITTYSISDQNLFTNILSNHLSQQADDTADSADKYTTNSLKLNDVQTLYTLEQCTPDLSSGECSSCLKDIIGESIPWSYLGSIGGRIIYPSCNLRFELFQFYNQVGEAQPPGTPPLPGTPPSRNKEKWRLVAIVVPVVILVVLFLIGYYYVLKRKGRKSRRTILRENFGEESATLEPMRFDWVVIEAVSNNFSKDNYIGKGGFGKVYKGTLLDGRQVAIKRLSINSKQGVEEFKNEVLLIAKLQHRNLVTFIGFCLEEHEKVLIYEFVPNKSLDYFLFDSQCKKSLTWVERFNIIGGIIRGILYMHELSRLKVIHRDLKPSNILLDENMIPKISDFGLARIVEISQDKRTTKRIIGTYGYMPPEYAMFGKYSEKSDIYSFGVMLLEIIAGRKNMSSSTQYHDAEGVNGLLNHVWRQWKDQTPLSILDPNIEDDYSKIEVTKCIQIGLLCVQHNPDARPSIVTITSYLSNYSIELPTPQEPIFFHYGRTISKSHAQESSSTQSANNSSLFSLNEMSISNFIPR 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04051 909 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Vifa1g04051 909 Pfam Protein kinase domain 580 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04051 909 FunFam cysteine-rich receptor-like protein kinase 10 655 861 - -
Vifa1g04051 909 ProSiteProfiles Gnk2-homologous domain profile. 380 488 IPR002902 -
Vifa1g04051 909 ProSiteProfiles Gnk2-homologous domain profile. 274 374 IPR002902 -
Vifa1g04051 909 ProSiteProfiles Gnk2-homologous domain profile. 28 137 IPR002902 -
Vifa1g04051 909 ProSitePatterns Protein kinases ATP-binding region signature. 585 607 IPR017441 GO:0005524
Vifa1g04051 909 ProSiteProfiles Protein kinase domain profile. 579 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04051 909 FunFam Cysteine-rich receptor-like protein kinase 25 382 488 - -
Vifa1g04051 909 Gene3D - 26 137 IPR038408 -
Vifa1g04051 909 Gene3D - 145 248 IPR038408 -
Vifa1g04051 909 Gene3D - 381 488 IPR038408 -
Vifa1g04051 909 Gene3D - 279 373 IPR038408 -
Vifa1g04051 909 Gene3D Transferase(Phosphotransferase) domain 1 655 863 - -
Vifa1g04051 909 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 27 136 - -
Vifa1g04051 909 SUPERFAMILY Protein kinase-like (PK-like) 562 890 IPR011009 -
Vifa1g04051 909 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
Vifa1g04051 909 Gene3D Phosphorylase Kinase; domain 1 542 654 - -
Vifa1g04051 909 SMART serkin_6 579 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04051 909 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 294 905 - -
Vifa1g04051 909 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 540 654 - -
Vifa1g04051 909 Pfam Salt stress response/antifungal 290 370 IPR002902 -
Vifa1g04051 909 Pfam Salt stress response/antifungal 154 246 IPR002902 -
Vifa1g04051 909 Pfam Salt stress response/antifungal 34 134 IPR002902 -
Vifa1g04051 909 Pfam Salt stress response/antifungal 398 484 IPR002902 -
Vifa1g04051 909 FunFam Cysteine-rich receptor-like protein kinase 25 145 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04051 Vifa-Chr1 622258763 622262747 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04051 274 909 Receptor kinase-like Gene Family AT4G05200 42.279 5.23e-167 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g04051 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04051 - - gmx:100806048 1020.38