Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04050 ATGGAACCTGCTGAGCTTATTTCTCAAGAATGGAGTTCTCTTAGTGGACTCTACACTGCTGAAGAATCTGACTTTATGAATCAGTTACTTGGTAACTGCTCACCCCCGCAACACCTCTATCAAAACGCCGATTCCGGAACTGAAGCTGCATTTTGGCCAGCACATGATTCCACAACAGTTACCGTCACTAAAAACAACAATTTGAACTTTGCTGCGCAATTCTCTAATGATACTAGTTGCATCAACAATACAGTTACCAGCTTTGAGTATATTTCTATGGGACTTTCGGTAAATGATTCCAAATTCAGTCCGTATACAACACAGCCTAATGAAAATTTTCTAGCTAACAAGAATTTAAAGTCCCCGGAGGAACATGAAATACTAGTTTCTGAACCAGAAGAGAACACGGGAAGGGAAAAAAATTCGCTGAAAAGATCTAGGAGCTCGAATGAGGTCTCCAAGATCAAGAGGAATGTTAAATGTAGGAAGAATATGAGATGTGCTTCTAGAAGCACTGATGATCTGACCTTAATCAGTTGTTGTTCAGAGGATGAGTCCAATTCTTCTCATGAACTACATGGAGGGTCATGTTCAAGTTTGAGCCAGAATGATTCCTCAGCTATGAAGTTAAGTGGTAAATCAAGATCTAGTCGAGGTCCTGCTACTGATCCACAAAGCCTATATGCAAGAAAAAGAAGAGAAAGAATAAATGAAAGGCTGAGAATCCTACAAAACCTTGTCCCCAATGGAACTAAGGTGGATATTAGCACCATGCTTGAGGAAGCTGTCCAATATGTTAAGTTTTTACAGCTTCAAATTAAGCTTCTAAGCTCTGATGATTTATGGATGTACTCTCCCATTGCTTACAATGGGATGAACATTGGACTGGAACTTGGTATTACTCCAGCAAAAGAAACAAAGGATATGCAATAG 933 0.3966 MEPAELISQEWSSLSGLYTAEESDFMNQLLGNCSPPQHLYQNADSGTEAAFWPAHDSTTVTVTKNNNLNFAAQFSNDTSCINNTVTSFEYISMGLSVNDSKFSPYTTQPNENFLANKNLKSPEEHEILVSEPEENTGREKNSLKRSRSSNEVSKIKRNVKCRKNMRCASRSTDDLTLISCCSEDESNSSHELHGGSCSSLSQNDSSAMKLSGKSRSSRGPATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYSPIAYNGMNIGLELGITPAKETKDMQ 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04050 310 MobiDBLite consensus disorder prediction 187 231 - -
Vifa1g04050 310 Pfam Helix-loop-helix DNA-binding domain 230 270 IPR011598 GO:0046983
Vifa1g04050 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 285 IPR036638 GO:0046983
Vifa1g04050 310 CDD bHLH_AtIND_like 221 283 - -
Vifa1g04050 310 Gene3D - 224 278 IPR036638 GO:0046983
Vifa1g04050 310 SMART finulus 226 275 IPR011598 GO:0046983
Vifa1g04050 310 MobiDBLite consensus disorder prediction 187 223 - -
Vifa1g04050 310 FunFam Basic helix-loop-helix transcription factor 221 278 - -
Vifa1g04050 310 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 65 278 IPR045843 GO:0003700|GO:0006355
Vifa1g04050 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 220 269 IPR011598 GO:0046983
Vifa1g04050 310 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04050 Vifa-Chr1 621857845 621859402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04050 10 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 42.735 3.56e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g04050 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04050 - - mtr:11440124 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04050 1 621857845 621859402 Vifa1g04050 1 621857845 621859402 ECH
Vifa1g04050 1 621857845 621859402 Vifa3g03300 3 947755249 947756249 PCT