Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04048 ATGGCTTACTCTAAAATTCTCTTGCTCTTCCTTGTTATTTTTCTCTATTCTGCAACTATCAAGGCACAAAACTCTCCATTTTTTCTGTATAGAAATTGTTCCACCAACCTTTTCACAACCAACAGCCTCTTCCAAACCAATCTCAAGACCCTACTCTCTTCATTTTCTTCAAAAGCCACCGGAAACACCGAATTCTTCAACACCACAATCCCTGGTATAAACCGCTCTGATTCTGTGTATGGATTGTTCATGTGCAGGGGGGATGTACCCTCTAAAGTCTGTCATGAATGCATAGCTGATGCAATCCAGCAACTATCCTCACAGTGTTCTTTGTTCAAACAAGCTGTGATTTGGTACAACGAGTGCATGCTTCGATACTCCGACTACTACTTCTTTTCGGCCGTTGATAAGTCTGGTTTTTCCTTGACCAATACGGCCGATGTCTCAAACAAGAAAACCTTCATTCCTTTATTGCATTCGTTCATGAATCAAACTGCAGATAAAGCAGCACGTCCACTTAAGAACAAGAAGTTTGCTACAAATGAAATACGAGTTTCGGAATTTGAGACCCTTTACTGTCTAGCTCAGTGCACCCCGGACTTGTCCCCAAATGATTGCAGAACCTGTCTCAGCAGTGCTATTGAGGAACTTCCAACATGTTGTAATGGGAAGGTGGGTGGGAGATATCTTAACCCTAGCTGTAATGTTAGGTATGAACTATATCCTTTTTATAGGTCTATTGATGTTACTTCACCTAATGACCTTGCTCCTCAAACAAATGACTCAAAGTTAGATGATAGATTTTCCCAAGATCCATTTTATCTTTCCTATAATTGCTCAACTCACCCCAATACAATCACCCAGGAAAACTTCAAGTTACTTCTTACTGATTTGTCTTCCCAAGCCGCAAGTGGCAAAACATTTCATACAGTTGATTTGGAAGGCACGGCGTACGGCCTCTTCATGTGTCGAGGTGACCTCCCCTCTAACCTATGCAGTCAATGTGTGAAAAACGCTACAGATCGAATATACTCAAAGTGTCTTTCATCCCTGGAGGGTATAATTTGGGCAATTCCATGGTCATATTTGGGAAGTGTTGGGGGAAGAATTATATATCCTAGTTGCAATATCAGGTTTGAATTGTTCCAATTTTACATGGACGCCGGCGACGACGAAGATCAGCCTCCGAGTAGTCCTTCTCCATTATCAAGAAATGCAGAAAAACGGACAATCATCTTCATTGTTTGCCCTATCATTATTTTGGTGATCCTCTTTTCTACTGGCTACTACTTACTAAAGAGAAGGGGAAGAAAGAGTCGTAGTACTATTCTTCGAGAAAATTTTGGTGAAGAAAGTGCCACTTTAGAACCACTACGATTTGATTGGATGGCAATTCAAGCGGCAACAAACAACTTTTCTATTGACAATTATATTGGCAAAGGTGGTTTCGGAGAGGTTTACAAGGGCATCCTTTTTGACGGTCGAGAAGTAGCTATAAAAAGGCTTTCTGAAAGTTCTAAACAAGGTGTGGAGGAGTTCAATAATGAAGTATTATTAATAGCCAAGCTTCAACATAGAAACCTAGTGACATTCATTGGGTTTTGTCTTGAAGAACATGAGAAAATACTTATTTATGAATATGTGCCCAACAAAAGTCTTGATTACATTTTATTTGATTCTCAACAGAAAAAGTCGTTAACTTGGGTTGAACGCGTTAACATCATAGGAGGAATTGCTCGAGGAATTTTATATTTGCATGAGCATTCTCGACTGAAAGTTATACACCGTGATCTCAAACCTAGCAATATTCTATTAGATGAAAATATGATTCCTAAAATTTCAGATTTTGGTTTAGCTCGAATTGTTGAAATAAGTCAAGACGAAAGAAGTACAAAGAGAATTGTCGGAACATATGGTTATATATCTCCGGAGTATGCAATGTTTGGACAATTTTCTGAAAAATCAGACGTTTATAGTTTTGGAGTAATGATTTTAGAGATTGTTGCTGGAAAGAAGAATAATATAAGCTCATCTACACCACAATGTTTTGTTGACGGTCTCTTGAATTATGTGTGGAGACAATGGATGGATCAAACACCTTTCAACATATTGGACCCAAATCTCAAAGAAGACTATTCTAAAAGTGAAGTCATCAAGTGTATTCAGATTGGTCTATTATGTGTTCAACATGATCCAGATGCAAGACCTTCGATTGTGACAGTTGCCTCTTATCTTAGCAGTTATTCAATTGAATTACCAGTACCTCATGAACCTGCGTTTTTCTTGCGTAGTAAAACTTATTCAAAATCTCTCATAGAAGAATCAACTTCTACTCAATCTGCCTATAGTTCTACTCTATTGTCTACAAATGAAATGTCTGCAAGTATTTTTTTACCTAGATAG 2403 0.3833 MAYSKILLLFLVIFLYSATIKAQNSPFFLYRNCSTNLFTTNSLFQTNLKTLLSSFSSKATGNTEFFNTTIPGINRSDSVYGLFMCRGDVPSKVCHECIADAIQQLSSQCSLFKQAVIWYNECMLRYSDYYFFSAVDKSGFSLTNTADVSNKKTFIPLLHSFMNQTADKAARPLKNKKFATNEIRVSEFETLYCLAQCTPDLSPNDCRTCLSSAIEELPTCCNGKVGGRYLNPSCNVRYELYPFYRSIDVTSPNDLAPQTNDSKLDDRFSQDPFYLSYNCSTHPNTITQENFKLLLTDLSSQAASGKTFHTVDLEGTAYGLFMCRGDLPSNLCSQCVKNATDRIYSKCLSSLEGIIWAIPWSYLGSVGGRIIYPSCNIRFELFQFYMDAGDDEDQPPSSPSPLSRNAEKRTIIFIVCPIIILVILFSTGYYLLKRRGRKSRSTILRENFGEESATLEPLRFDWMAIQAATNNFSIDNYIGKGGFGEVYKGILFDGREVAIKRLSESSKQGVEEFNNEVLLIAKLQHRNLVTFIGFCLEEHEKILIYEYVPNKSLDYILFDSQQKKSLTWVERVNIIGGIARGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIVEISQDERSTKRIVGTYGYISPEYAMFGQFSEKSDVYSFGVMILEIVAGKKNNISSSTPQCFVDGLLNYVWRQWMDQTPFNILDPNLKEDYSKSEVIKCIQIGLLCVQHDPDARPSIVTVASYLSSYSIELPVPHEPAFFLRSKTYSKSLIEESTSTQSAYSSTLLSTNEMSASIFLPR 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04048 800 Gene3D Phosphorylase Kinase; domain 1 436 547 - -
Vifa1g04048 800 ProSiteProfiles Gnk2-homologous domain profile. 136 243 IPR002902 -
Vifa1g04048 800 ProSiteProfiles Gnk2-homologous domain profile. 269 370 IPR002902 -
Vifa1g04048 800 FunFam cysteine-rich receptor-like protein kinase 10 548 752 - -
Vifa1g04048 800 Pfam Salt stress response/antifungal 33 129 IPR002902 -
Vifa1g04048 800 Pfam Salt stress response/antifungal 149 241 IPR002902 -
Vifa1g04048 800 Pfam Salt stress response/antifungal 284 380 IPR002902 -
Vifa1g04048 800 Gene3D - 273 384 IPR038408 -
Vifa1g04048 800 Gene3D - 137 243 IPR038408 -
Vifa1g04048 800 Gene3D - 25 131 IPR038408 -
Vifa1g04048 800 ProSiteProfiles Protein kinase domain profile. 472 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04048 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 593 605 IPR008271 GO:0004672|GO:0006468
Vifa1g04048 800 ProSitePatterns Protein kinases ATP-binding region signature. 478 500 IPR017441 GO:0005524
Vifa1g04048 800 FunFam Cysteine-rich receptor-like protein kinase 25 138 243 - -
Vifa1g04048 800 ProSiteProfiles Gnk2-homologous domain profile. 26 131 IPR002902 -
Vifa1g04048 800 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 793 - -
Vifa1g04048 800 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 433 547 - -
Vifa1g04048 800 Gene3D Transferase(Phosphotransferase) domain 1 548 752 - -
Vifa1g04048 800 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 26 130 - -
Vifa1g04048 800 SUPERFAMILY Protein kinase-like (PK-like) 455 785 IPR011009 -
Vifa1g04048 800 CDD STKc_IRAK 478 745 - -
Vifa1g04048 800 Pfam Protein kinase domain 474 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04048 800 SMART serkin_6 472 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04048 Vifa-Chr1 621748619 621752721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04048 197 800 Receptor kinase-like Gene Family AT4G23140 38.619 1.53e-141 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g04048 Pkinase 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04048 - - cam:101493835 683.715