Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04039 ATGGCTGATACCCATAACATTCTTCTCATCTTCACATTTGTTATCTTCCTCACTACTTTCACATCCACAACAAATTCATGGGATGACCCTTTTTTCCTATACCAATATTGCTCAAGTAACAGAACATCAGCCAATACTTCCTTCCAAATCAACCTCACCACTCTTCTCTCTTCCTTATCATCCATTGCAACAACCAAAACCAACACACAATTCTACAACACAACATTCAACGGAAACAACCCTTCTGACACAATCTATGGCATGTACTTATGCAGAGATGATGTTCCTTCTCAACTCTGTCAACAATGTATAGTAAATGCAACACAAAGACTTACCTCACAGTGTTCTTTGTCTAAAGAAGGTATTGTTTGGTATAATGAATGCATGGTTTGGTATTCCACAACCTTTATCTTCTCAACTGTGGCAACAACAACACCTAGTTTTAACTTGTTCAACACCGACAAAGTCCCCAACACAAAAAGTTTCATGAGTTTATTGTTTTCTACGATGAACAAAACTGCAGATGAAGCAGCTTTTGGTAATGGTGTTAAAAAATTTGCTACAAATGACATAACAATATCAAAATTTCAGACCCTTTATTGTTTAGTTCAATGCACACCAAATTTATCACCACATGAGTGTAGAATTTGTGTTAGTGGATTAATAGAGCAACTTCCGGGGTGTTGTGAAAATAGAGTTGGAGGAAGAGTTCTAAATCCAAGTTGTAATATTAGTCTGTTTTATAAAGCTCAAGTGGCAAATACAGCTTTCGGACTCTTCATGTGCCGTGGTGATGTTCAATTTTCCTTATGTGAGCTATGTGTGAAAAATGCAACACAAAGAATAACCAAAGATTGTAACTTTTTTCAAGAGGGTGTGATTTGGTATAGTCAATGTATGATTCGGTATTCGAATTGGAATTTCTTCTCTCTAGTGGATAAAAGTCATGTGTATTCTGAGATAAATGTTACAAGTGATTCTAGTCCCAACAAAGAGAGAAACTTGTTCAATTTTGTAATATCAACTACCTTATCAAATGTGGCAATTGTGGCAGGGGATAGTGATGGGAAGTTTGGAACAAAATCATTAGAATTGAATGATTTACAAACACTTTATACACTTGGTCAATGTACACATGATTTGTCAAGTGATGATTGCAAGGGTTGTTTGGGAGATATTATTGGAAATGGAATTCCTTGGCCTTATTTGGGAAGTGTTGGGGGAAGAGTTTTATATCCTAGCTGCAATTTGAGGTTTGAATTGTTCCAATTTTATATGGACAATGACAATGTTACCAAACCAAAAATTGCTCATTCTTCATCAGGGAAAAGAACAAACCGGCCACGAATAATTGCTTTGATTGTTTTGCTCTCAGTTGTTCCAGTGATACTCTTCTGTGTTGGATTCTGTTTGATAAAGAGAAAAAAAAGAAGGAGTTTTAGGTCTATTCTCAATGAAAACTTTGGTGATGAAAGTGCAATTTTAGAGCCATTGCAATATGGCTTAGATGTAATTGAAGCAGCAACTAACAACTTTGCAAATGAAAATTTCATTGGTAGAGGTGGATTTGGAGAAGTTTACAAGGGCACACTTTTTGATGGGCGACAAATAGCCGTAAAGAGACTCTCAAAAAGCTCAACGCAAGGTGGAAAAGAGTTCAAGAATGAAGTTTTGTTGATCGCCAAGCTTCAACATAGAAATTTAGTCACATTCATCGGTTTTTGCCTCCAAGAACAAGAGAAAATACTTATTTATGAATATGTGCCGAACAAGGGCCTTGATCACTTCTTGTTTGACGTTCGACAAAGAAAGTTCTTAAGTTGGCCCGAACGTTACAACATTATAAGAGGAATTGCTCAAGGAATTATCTACTTACATGTACATTCTCGACTCAAAGTTATTCATCGTGACCTGAAACCTAGTAATATTTTACTAGATGAAAATATGACTCCAAAAATATCAGACTTTGGCCTTGCTAGAATTTTTGAACTAAACCAAGACGAAGCGAGTACAAATAGGATCGTTGGAACATTAGGTTACATGTCTCCGGAATATGCAATGCTCGGACAATTTTCTGATAAATCTGATGTTTATAGTTTCGGAGTCATGGTTTTAGAAATTATGACAGGAAAGAAGAACGTAAGGTCTTATGAATCAATTGTTGGTGATAGTCTCCTTAGTTATGTTTGGAGACAATGGAGGGATGAAACACCATTCAACATATTAGACCCAAACATTAAAGGAACTTATTCTGAAAGTGAAGTCAAAAAGTGTATTCAGATTGGTTTATTGTGTGCTCAGCAGTTCCCAGATGCAAGACCAACAATTGCAACAGTAGTTTCATATCTTAACAACGACTTCATTGAATTACCAGCTCCCCAAGAACCTGCATTTTTGTCCCATGGTCAAAAGAATGCAAAAGGCATTCCACAAGAATCAAGTTCTACTCAGTCTATTAGTACATCCACAGCTTTGACGATCAACGATTTGTCTATAACCGAATTGATTCCTCGATAA 2517 0.3627 MADTHNILLIFTFVIFLTTFTSTTNSWDDPFFLYQYCSSNRTSANTSFQINLTTLLSSLSSIATTKTNTQFYNTTFNGNNPSDTIYGMYLCRDDVPSQLCQQCIVNATQRLTSQCSLSKEGIVWYNECMVWYSTTFIFSTVATTTPSFNLFNTDKVPNTKSFMSLLFSTMNKTADEAAFGNGVKKFATNDITISKFQTLYCLVQCTPNLSPHECRICVSGLIEQLPGCCENRVGGRVLNPSCNISLFYKAQVANTAFGLFMCRGDVQFSLCELCVKNATQRITKDCNFFQEGVIWYSQCMIRYSNWNFFSLVDKSHVYSEINVTSDSSPNKERNLFNFVISTTLSNVAIVAGDSDGKFGTKSLELNDLQTLYTLGQCTHDLSSDDCKGCLGDIIGNGIPWPYLGSVGGRVLYPSCNLRFELFQFYMDNDNVTKPKIAHSSSGKRTNRPRIIALIVLLSVVPVILFCVGFCLIKRKKRRSFRSILNENFGDESAILEPLQYGLDVIEAATNNFANENFIGRGGFGEVYKGTLFDGRQIAVKRLSKSSTQGGKEFKNEVLLIAKLQHRNLVTFIGFCLQEQEKILIYEYVPNKGLDHFLFDVRQRKFLSWPERYNIIRGIAQGIIYLHVHSRLKVIHRDLKPSNILLDENMTPKISDFGLARIFELNQDEASTNRIVGTLGYMSPEYAMLGQFSDKSDVYSFGVMVLEIMTGKKNVRSYESIVGDSLLSYVWRQWRDETPFNILDPNIKGTYSESEVKKCIQIGLLCAQQFPDARPTIATVVSYLNNDFIELPAPQEPAFLSHGQKNAKGIPQESSSTQSISTSTALTINDLSITELIPR 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04039 838 ProSiteProfiles Protein kinase domain profile. 512 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04039 838 Pfam Salt stress response/antifungal 158 244 IPR002902 -
Vifa1g04039 838 Pfam Salt stress response/antifungal 252 305 IPR002902 -
Vifa1g04039 838 Pfam Salt stress response/antifungal 37 134 IPR002902 -
Vifa1g04039 838 Pfam Salt stress response/antifungal 331 420 IPR002902 -
Vifa1g04039 838 Pfam Protein kinase domain 514 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04039 838 Gene3D Transferase(Phosphotransferase) domain 1 588 789 - -
Vifa1g04039 838 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 473 587 - -
Vifa1g04039 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Vifa1g04039 838 SUPERFAMILY Protein kinase-like (PK-like) 496 807 IPR011009 -
Vifa1g04039 838 ProSiteProfiles Gnk2-homologous domain profile. 30 137 IPR002902 -
Vifa1g04039 838 Gene3D Phosphorylase Kinase; domain 1 475 587 - -
Vifa1g04039 838 FunFam Cysteine-rich receptor-like protein kinase 25 316 424 - -
Vifa1g04039 838 CDD STKc_IRAK 518 785 - -
Vifa1g04039 838 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
Vifa1g04039 838 Gene3D - 315 424 IPR038408 -
Vifa1g04039 838 Gene3D - 29 136 IPR038408 -
Vifa1g04039 838 Gene3D - 248 308 IPR038408 -
Vifa1g04039 838 Gene3D - 143 247 IPR038408 -
Vifa1g04039 838 FunFam Cysteine-rich receptor-like protein kinase 25 146 249 - -
Vifa1g04039 838 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 836 - -
Vifa1g04039 838 SMART serkin_6 512 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04039 838 ProSiteProfiles Gnk2-homologous domain profile. 144 251 IPR002902 -
Vifa1g04039 838 ProSiteProfiles Gnk2-homologous domain profile. 318 424 IPR002902 -
Vifa1g04039 838 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 30 136 - -
Vifa1g04039 838 FunFam cysteine-rich receptor-like protein kinase 10 588 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04039 Vifa-Chr1 620339187 620342445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04039 253 838 Receptor kinase-like Gene Family AT4G05200 43.894 1.14e-166 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g04039 Pkinase 6.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04039 - - aprc:113852296 839.721