Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04035 ATGGGAAGAAAAAAGTTGGTTGTTGCATCTGATTTTGCTCTATCTTTCATGTGGGTATGCTCTGGTGTTCTTCTAAAATCACTTGTAATAAAAAACATGACCTTTTCTGATTCCCATTTTGGTGAGATTGTGAAAATTTCATTTTCCATTGCCAACATGTTCTTTTATGCTTTTCTTTCTAAGCTTTTTCATGGTGGTGCCAACAATCCTCTTGCTACTTTGGTGGATGCTATTTCAGGAGATTTTCATAACTTCCTTTTCTGCATTGGCTCTAGAGTTCCTGCTCAGGTGATTGGATACATTGTTGGAGTAAAACTTCTTATTGATAACATTCCAGAAGTAGGACGTGGACCGCGTTTGAATGTTAACATTGCTCTAGGAGCATTAACAGAAGGATTACTAACATTTGTAATTGTAATCATTTCACTTGGGCTTGCTGCTACAAAAATTCGAAGAAATTTCTTCATGAAGACTTGGATATCCAGCCTCATCAAGATAATACTTCATAAACTCGGTTCTGGTCTCACCGGTGGATGTATGAACCCAGCATCGGTAATGGGATGGGCTTATGCTCGAGGGGATCACATAACAAAGGAGCATCTCTTTGTGTACTGGCTTGCTCCTATAGAGGCAACTCTTTTAGCAGTATGGACATTTAAATTGCTAGTACAACACATGAGAAAAGATAAAACATGCTCAAAGAGAAAATCAGATTGA 717 0.3808 MGRKKLVVASDFALSFMWVCSGVLLKSLVIKNMTFSDSHFGEIVKISFSIANMFFYAFLSKLFHGGANNPLATLVDAISGDFHNFLFCIGSRVPAQVIGYIVGVKLLIDNIPEVGRGPRLNVNIALGALTEGLLTFVIVIISLGLAATKIRRNFFMKTWISSLIKIILHKLGSGLTGGCMNPASVMGWAYARGDHITKEHLFVYWLAPIEATLLAVWTFKLLVQHMRKDKTCSKRKSD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04035 238 Gene3D Glycerol uptake facilitator protein. 7 238 IPR023271 -
Vifa1g04035 238 SUPERFAMILY Aquaporin-like 10 228 IPR023271 -
Vifa1g04035 238 Pfam Major intrinsic protein 11 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g04035 238 PANTHER AQUAPORIN SIP2-1-RELATED 6 238 IPR044226 GO:0015267
Vifa1g04035 238 PRINTS Major intrinsic protein family signature 162 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g04035 238 PRINTS Major intrinsic protein family signature 130 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g04035 238 PRINTS Major intrinsic protein family signature 202 222 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g04035 238 PRINTS Major intrinsic protein family signature 88 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04035 Vifa-Chr1 619862440 619863255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04035 1 238 Major Intrinsic Protein MIP AT3G56950 55.230 4.94e-86 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04035 K09875 - gmx:100786138 331.643