Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04033 ATGCGGCCAAACGCCGCCGGTAACGGCAACGATGACCGATGGGGAACTGCCGGGCCGGCGATTCGCAAGAAAGGAACGAGTGTTCGTGCATGGCTGGTTGTCGACGTTACCGGAGACGCACAAGTGGTTGAGGCCGGAAAACACGCCATCATGAGACGAACTGGGCTCCCCGCGCGTGACCTTCGAATCCTCGATCCCCTCCTTTCCTATCCGTCCACCGTTCTCGGACGAGAGAGAGCAATCGTCATCAATTTGGAACACATCAAAGCGATTATCACCGCAAACGAAGTTCTTCTTCTCAATTCAAGAGATCCTTCCGTTACTCCTTTCGTTCAGGAGCTTCAAGCGAGGATCCTCCGTCATCACGATGCGACCAGTAATCCTCAAGAGGATTCTCACGGCGGCGGAATTAAGATTCTTCCGTTCGAATTTGTTGCGCTTGAGGCGTGTCTTGAAGCGGCTTGTAGCGTTTTGGAGAATGAAGCAAAGACCTTGGAGCAAGAGGCGCATCCCGCCCTTGATAAATTGACGTCGAAGATTAGTACTCTTAATTTGGAGCGTGTGAGGCAAATTAAGAGCCGTTTGGTTGCGATAACGGGGAGGGTTCAAAAGGTGAGAGATGAATTGGAACATTTGCTTGATGATGATGAGGATATGGCTGAAATGTATCTTACTGAAAAGATACTTCAACAGCAGTTGGAACAAACGTCTTCTGAGGAAGATATTGATGCTCATGATGATGATGATGATAATGATATTGATAGAGCACAAGGTGTTGAAATATCTTTGGAAGAGGGAGTAGGAGGAGGGGCAGGTTATGAGGATGAGGATCATCAAAATCAGAATGTGGGAGAACACATGTTTGGTGCTACAAATCAAATTGGTAGGGATAGCCGCGGTGGAACACGGGCGAGCACTACTTACAGTGCCATCACCAATAAGCTTGATGTTGAGGAGCTTGAGATGCTGTTGGAAGCATACTTTGTTCAGATTGATGGAACTCTCAACAAGCTTTCCACGTTGAGGGAGTACGTCGATGACACAGAGGATTACATCAACATTATGCTGGATGACAAACAGAACCATCTCCTCCAAATGGGAGTCATGTTGACCACGGCAACCCTGGTAGTGAGTGCCTTTGTTGTTGTGGCTGGTGTTTTTGGCATGAATATTCATATTGATCTGTTTGATGATAAGCTCTATGGGATGAGAGAGTTTATGTGGACTGTTGGTGGCGGCACTGCTGGAACCATATTCTTGTATGTGGTTGCCATTGCCTGGTGCAAGTATAAACGCTTGCTAGAATAA 1308 0.474 MRPNAAGNGNDDRWGTAGPAIRKKGTSVRAWLVVDVTGDAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITANEVLLLNSRDPSVTPFVQELQARILRHHDATSNPQEDSHGGGIKILPFEFVALEACLEAACSVLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKILQQQLEQTSSEEDIDAHDDDDDNDIDRAQGVEISLEEGVGGGAGYEDEDHQNQNVGEHMFGATNQIGRDSRGGTRASTTYSAITNKLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGVFGMNIHIDLFDDKLYGMREFMWTVGGGTAGTIFLYVVAIAWCKYKRLLE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04033 435 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 18 434 IPR039204 -
Vifa1g04033 435 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g04033 435 MobiDBLite consensus disorder prediction 232 253 - -
Vifa1g04033 435 Gene3D - 19 102 - -
Vifa1g04033 435 CDD Mrs2_Mfm1p-like 31 433 IPR039204 -
Vifa1g04033 435 FunFam Magnesium transporter MRS2-1 19 102 - -
Vifa1g04033 435 Coils Coil 148 168 - -
Vifa1g04033 435 Gene3D Magnesium transport protein CorA, transmembrane region 104 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04033 Vifa-Chr1 619738715 619740866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04033 31 435 MRS2 Gene Family AT3G19640 65.090 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04033 - - vvi:100258345 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04033 1 619738715 619740866 Vifa1g04033 1 619738715 619740866 ECH