Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04030 ATGGTTCCTTCAATCCCCATCACCGACGAAGCCGTAGCCGTTTCAATCGACAGCCCTAAATCAAAATCAATGAAGAAGAAGAAGGAAAAGCTCCCAAACGACATCGTTTCGGACGAAGAAGCTTCGAAGAAGAAGAGTTCGAAGAAGAGGAAGAAGAGTTCGGATGATGACGAAGAGGTGAAGAATGAAACTGGTTCTGAGGTTAAGAAGGAGAAGAAGAAGAAGAAATCGAAGGTGGAAGATGAGGATGTTGTTGAAGAAGTTGCTGTGAAGAAGGATGATCCGAATGCGGTTTCGAATTTTAGAATTTCGGAACCGTTAAAGATGAAGCTGAAAGAGAAGGGGATTGAAGCTTTGTTTCCGATTCAAGCTATGACTTTTAATACAATTCTTGATGGGTCTGATTTGGTTGGGCGTGCTCGTACTGGTCAGGGAAAAACTCTTGCATTTGTTTTGCCTATATTGGAGTCGTTGACAAATGGACCAGCTAAATCGGTAAGAAAGACTGGCTATGGGAGAGTTCCAAGTGTTATTGTGCTCTTACCTACCAGGGAATTGGCCAATCAGGTGTTTGCTGACTTTGAAGTATATGGTTCGTCCTTGGGATTGGCTGCTTGCGCCGTGTATGGTGGAGCTCCGTATGGAGCACAAGAGGCTAAACTTCGTAGAGGCGTTGATGTAATTATTGGAACACCGGGTCGTATTAAGGATCATATTGAGAGGAAAAATATTGACCTGAGTCACCTTAAGTTTCGTGTCCTTGATGAGGCAGATGAGATGCTGAGGATGGGTTTTGTTGATGATGTTGAACTCATTCTAGGTAAGGTACAAGATGTTACTAAAGTTCAGACGCTTCTTTTCAGTGCTACTTTGCCAAGCTGGGTTCAACAAATTTCTATGAAATTTCTTAAAAAAGACAAGGCAACTGTTGATCTTGTCGGAAATGAGAAAATGAAGGCTAGCGCCAATGTTAGGCATATTATCCTTCCTTGTAATAGTACTGCTAGGGCTCAGGTCATCCCTGATATTATTCGCTGTTATAGCAGTGGTGGCCGAACAATTATATTTGCAGAGAAAAAGGAGTCTGCTTCTGAGCTTGCCGGATTGTTGCCTGGCGCAAGACCTATCCATGGTGACATTCAGCAGTCACAGCGTGAGATTACATTGAAAGGTTTTAGGTCTGGCAAATTCATGACATTGGTGGCCACCAATGTGGCGGCAAGGGGTCTTGATATCAATGATGTTCAGTTGATTATTCAGTGTGAGCCTCCCCGGGATGTAGAAGCCTATATTCATCGATCTGGACGGACAGGAAGAGCTGGCAACACTGGAGTTGCTGTGATGCTTTATGATCCTAGAAGGTCAAATATATCTAAGATCGAAAGAGAAGCTGGTATTAAATTTGAACATGTATCTGCTCCTCAGCCTGATCAAATTGCTAAAGCTATTGGCGGGGAAGCTGCTGAATTGATTTCTGATGTGTCTGATAGTGTGATTCCTTCATTCAAAGCTGCCGCCGAGGAACTTTTGAATAACTCTGGTTTAACAGCTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGAGGTAAAGAAAAGGTCACTGCTGACTTCAATGGAGAATTACGTTACACTACTACTTGAGGGAGGAAAGCCTATGTTCACCCCATCCTTTGCATTTGGAACCCTGAGGAGATTCATATCTGAAGATAAGGTTGATGGAGTGCAAGGTCTTGCTCTCACTGCAGATGGACAGGGTGCTGTTTTTGATGTACCAGTCAAGGACTTGGATGCATTTCTTGCTGGTCAGAAGAATGCAGTTAATGTAAGCTTAAAGGTTGTAACAGAATTGCCTAGTTTGCAACAAAGAGAGGAACCAAATAGGGGTAGATTCGGTAGTCGGTTTGGTTCTGGAAGAGGGTCTGGTAGATTTAATAGCAGAGGACGAGGTGGTGGTGGAAGAGGTTTTGGTGGAGGCAGAGGGGGAAATAGATGGTAA 2010 0.4353 MVPSIPITDEAVAVSIDSPKSKSMKKKKEKLPNDIVSDEEASKKKSSKKRKKSSDDDEEVKNETGSEVKKEKKKKKSKVEDEDVVEEVAVKKDDPNAVSNFRISEPLKMKLKEKGIEALFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSVRKTGYGRVPSVIVLLPTRELANQVFADFEVYGSSLGLAACAVYGGAPYGAQEAKLRRGVDVIIGTPGRIKDHIERKNIDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVQQISMKFLKKDKATVDLVGNEKMKASANVRHIILPCNSTARAQVIPDIIRCYSSGGRTIIFAEKKESASELAGLLPGARPIHGDIQQSQREITLKGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIEREAGIKFEHVSAPQPDQIAKAIGGEAAELISDVSDSVIPSFKAAAEELLNNSGLTAVELLAKALAKAVGYTEVKKRSLLTSMENYVTLLLEGGKPMFTPSFAFGTLRRFISEDKVDGVQGLALTADGQGAVFDVPVKDLDAFLAGQKNAVNVSLKVVTELPSLQQREEPNRGRFGSRFGSGRGSGRFNSRGRGGGGRGFGGGRGGNRW 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04030 669 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 338 479 IPR001650 -
Vifa1g04030 669 Pfam GUCT (NUC152) domain 530 625 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vifa1g04030 669 MobiDBLite consensus disorder prediction 1 84 - -
Vifa1g04030 669 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 38 489 - -
Vifa1g04030 669 Gene3D - 548 620 - -
Vifa1g04030 669 Pfam Helicase conserved C-terminal domain 342 441 IPR001650 -
Vifa1g04030 669 CDD DEADc 107 304 - -
Vifa1g04030 669 SMART ultradead3 115 327 IPR014001 -
Vifa1g04030 669 MobiDBLite consensus disorder prediction 20 84 - -
Vifa1g04030 669 MobiDBLite consensus disorder prediction 626 669 - -
Vifa1g04030 669 Gene3D - 320 547 IPR027417 -
Vifa1g04030 669 Pfam DEAD/DEAH box helicase 120 297 IPR011545 GO:0003676|GO:0005524
Vifa1g04030 669 CDD SF2_C_DEAD 324 450 - -
Vifa1g04030 669 SUPERFAMILY RNA-binding domain, RBD 535 617 IPR035979 GO:0003676
Vifa1g04030 669 CDD GUCT_RH7_like 537 622 - -
Vifa1g04030 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 453 IPR027417 -
Vifa1g04030 669 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 127 309 IPR014001 -
Vifa1g04030 669 SMART helicmild6 364 441 IPR001650 -
Vifa1g04030 669 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 253 261 IPR000629 -
Vifa1g04030 669 Gene3D - 27 312 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04030 Vifa-Chr1 619178375 619182815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04030 79 447 Eukaryotic Initiation Factors Gene Family AT3G19760 29.058 5.75e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04030 K16911 - jre:108998595 867.455