Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04014 ATGGATTCTACTTCAAAACAGATCTGGAAAATCTCCTACACAGCTTACATCCTGTTTGGTTTCCTCACTCTAACTTCAACAACAGAAGCATCTCCAACATACAAAGGCTCTTACTGCAACGACACCATAACCTACGAACCAAACAGCACCTTATCTACAAACATCAACGTCCTCTTAAATTCTCTAACCACCAACTCCTCCCAACAACAAGACGGTTATTACATGAATATCATGGGTTTCGGAACAACAAACGCCGTCAACGGAATGTTTCTCTGTCGCGGCGACATCAACACAAGCACATGTCAAAATTGCGTCACTGACGCCGCTCAACGGATCAAACGGCGTTGTAACAACCAAACGCAAGCGATTATTTGGTACGAAGAGTGTATGCTACGTTACACGAATACGTATTTTAAATTCTACAGTATCGAACCAAGGTTGAATCTGAAAGACGGTAAAAAAGTCTCCGGCGTTGACTTTGACTTGTTTAATAAAACGGTGTACGGTTTGTTGAATAAGGTGGCGTTTATGGCGGCGCATTCCACGACGGCGAAGAGATTCGCTACCGGAGAAGTGAAAATTAGGAAAACGTCGTTGACGGTTTATGGATTGGCGCAGTGTACTACGGATTTATCGACATCTATGTGTGACACGTGCTTAGGAATGGCGATCGGAACTTTGCCGGAGTGTTGCGGTGATGAAGAGGGTGCAAGTGCTCTGCTTGCGTCGTGTATGGTTAGATATGAGCTCTATCCATTTTACAATGTAACTTCATCTTCTTCAGGAAAAAGTAGAGTTGGAGCAAAAGTAATTATCATCATAATTTTCATAGCCTTTCTTTTGGTATTACTTATATTTGTAGGCTGTTATGGCAAACGGAGAGTTACAAGGCAGAGACGTAGGACAATGCTAAAGGAAAATTTTGGGGATGAACTAAAAACACTGGAGTCATTACAATTCAAGTTTGTTACAATTCAAGCTGCCACCAACAAATTTTCAAAGGAGAACCAGATAGGTAAAGGAGGATTTGGTGTTGTCTACAAGGGTGTTCTTTCTGATGGACAAGAAATAGCAGTAAAGAAACTGTCAATAAATTCAGGACAAGGTTCTATAGAGTTTCAAAATGAAATATTACTCATAGCCAAGCTTCAACACGTAAATTTGGTGACTTTGTTAGGATTCTGTTTGGAAGAACGAGAGAAAATGCTTATATATGAGTATGTGTCTAATAAGAGTCTTGATTATTTTCTATTTGATCACAAAAAACACAGGGTGTTAGATTGGTTCGAGCGTTACAAAATTATAGGAGGAATTGCACGAGGAATTCTTTACTTACATGAGTATTCAAGACTTAAAGTCATACATCGAGATCTCAAATCTAGCAATATACTGTTAGATGATAATATGAATCCAAAAATATCTGATTTTGGTTTGGCAAGAATAGTTACAATCGATCAAGAACTGGGAAGAACTAACAGAATTGTGGGAACATACGGTTATATGGCTCCAGAATATGCAATGCACGGACAATTTTCTGAGAAATCAGATGTATTTAGTTTTGGGGTTATAATTATTGAGATAATTAGTGGAAAGAGAAATGCCCGCCCCATTGCATCAGATGATTTTGATGACCTCCTAAGTATGGCTTGGACAAAATGGAGGACTGAAACGCCATTGGAATTGTTGGACCCCGTTCTAAAAGACTCATATTCTGATAATGAAGTTATTAAGTGCGTTCAAATTGGTTTGTTATGTGTTCAAGAAAGTCCACTTGATAGACCAACAATGGCACAAGTTGTCTCATATCTCAGTAATCTTTTAGTTGAATTACCATTTCCTCAAGAACCAGTATTTTCCATGGATAGGAGAACGAGCTTAAACATAACAACAGAGTCTATTTCGGGTCAGTTTAATAGTAATTCTGCGGCATCATCAATCAATGACATGACCAAGAGTCAATTTTTCCCTAGATAA 1974 0.387 MDSTSKQIWKISYTAYILFGFLTLTSTTEASPTYKGSYCNDTITYEPNSTLSTNINVLLNSLTTNSSQQQDGYYMNIMGFGTTNAVNGMFLCRGDINTSTCQNCVTDAAQRIKRRCNNQTQAIIWYEECMLRYTNTYFKFYSIEPRLNLKDGKKVSGVDFDLFNKTVYGLLNKVAFMAAHSTTAKRFATGEVKIRKTSLTVYGLAQCTTDLSTSMCDTCLGMAIGTLPECCGDEEGASALLASCMVRYELYPFYNVTSSSSGKSRVGAKVIIIIIFIAFLLVLLIFVGCYGKRRVTRQRRRTMLKENFGDELKTLESLQFKFVTIQAATNKFSKENQIGKGGFGVVYKGVLSDGQEIAVKKLSINSGQGSIEFQNEILLIAKLQHVNLVTLLGFCLEEREKMLIYEYVSNKSLDYFLFDHKKHRVLDWFERYKIIGGIARGILYLHEYSRLKVIHRDLKSSNILLDDNMNPKISDFGLARIVTIDQELGRTNRIVGTYGYMAPEYAMHGQFSEKSDVFSFGVIIIEIISGKRNARPIASDDFDDLLSMAWTKWRTETPLELLDPVLKDSYSDNEVIKCVQIGLLCVQESPLDRPTMAQVVSYLSNLLVELPFPQEPVFSMDRRTSLNITTESISGQFNSNSAASSINDMTKSQFFPR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04014 657 Pfam Salt stress response/antifungal 162 251 IPR002902 -
Vifa1g04014 657 Pfam Salt stress response/antifungal 39 135 IPR002902 -
Vifa1g04014 657 Gene3D Phosphorylase Kinase; domain 1 292 407 - -
Vifa1g04014 657 Gene3D Transferase(Phosphotransferase) domain 1 408 611 - -
Vifa1g04014 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Vifa1g04014 657 FunFam Cysteine-rich receptor-like protein kinase 10 146 253 - -
Vifa1g04014 657 Pfam Protein kinase domain 332 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04014 657 Gene3D - 154 253 IPR038408 -
Vifa1g04014 657 Gene3D - 32 138 IPR038408 -
Vifa1g04014 657 SMART serkin_6 332 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04014 657 CDD STKc_IRAK 338 606 - -
Vifa1g04014 657 ProSiteProfiles Protein kinase domain profile. 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04014 657 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 32 138 - -
Vifa1g04014 657 SUPERFAMILY Protein kinase-like (PK-like) 318 630 IPR011009 -
Vifa1g04014 657 ProSiteProfiles Gnk2-homologous domain profile. 143 253 IPR002902 -
Vifa1g04014 657 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 652 - -
Vifa1g04014 657 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Vifa1g04014 657 ProSitePatterns Protein kinases ATP-binding region signature. 338 361 IPR017441 GO:0005524
Vifa1g04014 657 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 292 407 - -
Vifa1g04014 657 FunFam cysteine-rich receptor-like protein kinase 10 408 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04014 Vifa-Chr1 616940841 616948911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04014 9 657 Receptor kinase-like Gene Family AT4G05200 41.950 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g04014 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04014 - - cam:101500396 981.859