Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g04008 | ATGGACAAAGAAAGAATTTCTTCAGCTATGATTATGTTAATCATTTTAATGTTAAAATCTATCCACTTTGTTTCTGGTATAGACAATCCTATAGATACATATTGTCCTGATAATTTTCCACTTTACACTTCCAACACTTCATTCCACAAGAATCTCAAGCTTCTCATGGAAACTCTCTCTTCCAATATAGTAGCTTCAAACACAAGTTTCTTCAACAACACGTCAACAGGAGAAGGACTAGACAAAGTTTATGGACAAGCACTGTGCAGAGGGGACATGACAAATTCCACAGTTTGCAAAGAATGCATTGAGAAAGCAAGTAAAGATTTGATGAATAGGTGTAAGAGTGAGGATGCAATGATATGGTATGAACTTTGTCAAGTTCGGTATTCGTTTCAGATGTTCTTTACAAACGCGGTTTATACTGGAAAATATCCTAAGCAGAATGATCTAGAGAAGCATGTTTCGGATCCTATTAGTTTTCAACAGGTTTTGAATTATTTAATGAACAATATCTCAAACGAGGCTGCTTTTAGTCCTTCTAAGAACATGTTTGCAACAGCAGAAATCGAATTTTCTGACAAAAAAAGAACTTATGGACTCGTCGAATGTACGAAAGACATTTCTGAAACTGAATGCAGAAGTTGTTTGAGTTCTGCAATCATGGAACTAAATCAATGCTGCTCATATAGGGAAGGAGGGATTATTGTTAGTCGCAATTGCAACGTTCGATTCGATTTGTTTGAGTTTTTTAATGGTTCTTCATCATCAGTATCCCTTTTGATTTTCCCAACTTCCAAAGAAGGAAAATGGAAGCCTTGGATGTTTATCTTGACTATATGTGGCTCAGTTTTAACATTAGCTGCTATTATTGGGTTGTGCACTACTTGCCTCAGGCAGAAAAAGGACAAAGAAAGAGAAGAAGAAAGAAGCGAAAGGACGGTATTAGAAGAATTGTCTAGCACGAAGAATGTAGTAATCACACAAGAAGGTCAATTGATTAGCTCTGATGAAATGATGTTTATGACTTTAGAAACCATTAAGGCGGCTACCGGTGACTTTTCGGATATAAATAAGTTGGGACAAGGAGGGTTTGGTGTGGTCTACAAGGGGGTTCTACCAGATGGTAATGAAATAGCAGTTAAGAGATTATCGAGAAAGTCTTGGCAAGGTATAGAAGAATTAAAAAATGAGATCATTCTAATAGCTAAGCTTCAACACAAGAATTTGGTGAGATTGTTGGGATATGTCTTAGAAGGAAATGAAAAGATACTCATATATGAACTCGTGTCAAATAGAAGTCTTGATCAATTTATATTCGATCCAAACAAACGTCCTATACTTGATTGGAACACATGCTATGGCATCATCGGCGGCATAGCAAGAGGACTACTTTATCTACATGAGGAATCTCGGCTTAAAGTCATTCATCGCGACCTAAAGCCAAACAATGTGTTGTTAGACCATGATTTCATAGCCAAAATATCAGATTTTGGTATGGCTAGAATGTTTTCTGAGAATCAGAATACAGCAAACACAAAAAGAGTTGTGGGAACACATGGATATATGGCTCCAGAATATGCAATGGAGGGACTATTCTCAGTGAAATCTGATGTCTTCAGCTTTGGTGTAATTATGCTTGAAATCATCAGTGGGAAAAGAAATAGCGGATTTTACATAACCGAACTTGCCCCGACTCTACTGGCATATGCTTGGAGGATGTGGAATGAAGGAAAGGGGTTAGAAATTGTGGATCCTATATTATTGGAATCATGTATTAATTCGGAATCTGAAGTTCTTAGGTGCATTCATATTGGGCTCTTGTGTGTACAGGAAGATCTGCAACACAGGCCCACCATGTCAAATGTTGTGGTTCTCCTAGGAAGTGAATCAATGGTTCTTCCCCAACCAAGACAACCAGCATTTTCTTTAGGTAAGATGGTTCTCGTAGATCCTTCTACATCAACAAATCGTTCGGCAAATGAGAGTATATGGTCTAGTATTTCACCACGATGA | 2016 | 0.3755 | MDKERISSAMIMLIILMLKSIHFVSGIDNPIDTYCPDNFPLYTSNTSFHKNLKLLMETLSSNIVASNTSFFNNTSTGEGLDKVYGQALCRGDMTNSTVCKECIEKASKDLMNRCKSEDAMIWYELCQVRYSFQMFFTNAVYTGKYPKQNDLEKHVSDPISFQQVLNYLMNNISNEAAFSPSKNMFATAEIEFSDKKRTYGLVECTKDISETECRSCLSSAIMELNQCCSYREGGIIVSRNCNVRFDLFEFFNGSSSSVSLLIFPTSKEGKWKPWMFILTICGSVLTLAAIIGLCTTCLRQKKDKEREEERSERTVLEELSSTKNVVITQEGQLISSDEMMFMTLETIKAATGDFSDINKLGQGGFGVVYKGVLPDGNEIAVKRLSRKSWQGIEELKNEIILIAKLQHKNLVRLLGYVLEGNEKILIYELVSNRSLDQFIFDPNKRPILDWNTCYGIIGGIARGLLYLHEESRLKVIHRDLKPNNVLLDHDFIAKISDFGMARMFSENQNTANTKRVVGTHGYMAPEYAMEGLFSVKSDVFSFGVIMLEIISGKRNSGFYITELAPTLLAYAWRMWNEGKGLEIVDPILLESCINSESEVLRCIHIGLLCVQEDLQHRPTMSNVVVLLGSESMVLPQPRQPAFSLGKMVLVDPSTSTNRSANESIWSSISPR | 671 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g04008 | 671 | Gene3D | - | 146 | 250 | IPR038408 | - | |
Vifa1g04008 | 671 | Gene3D | - | 31 | 135 | IPR038408 | - | |
Vifa1g04008 | 671 | FunFam | Cysteine-rich receptor-like protein kinase 10 | 308 | 429 | - | - | |
Vifa1g04008 | 671 | ProSiteProfiles | Gnk2-homologous domain profile. | 30 | 135 | IPR002902 | - | |
Vifa1g04008 | 671 | SMART | serkin_6 | 354 | 619 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g04008 | 671 | CDD | STKc_IRAK | 360 | 624 | - | - | |
Vifa1g04008 | 671 | ProSitePatterns | Protein kinases ATP-binding region signature. | 360 | 382 | IPR017441 | GO:0005524 | |
Vifa1g04008 | 671 | Gene3D | Phosphorylase Kinase; domain 1 | 313 | 429 | - | - | |
Vifa1g04008 | 671 | FunFam | Uncharacterized protein | 430 | 633 | - | - | |
Vifa1g04008 | 671 | Gene3D | Transferase(Phosphotransferase) domain 1 | 430 | 633 | - | - | |
Vifa1g04008 | 671 | ProSiteProfiles | Protein kinase domain profile. | 354 | 642 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g04008 | 671 | Pfam | Salt stress response/antifungal | 41 | 132 | IPR002902 | - | |
Vifa1g04008 | 671 | Pfam | Salt stress response/antifungal | 156 | 246 | IPR002902 | - | |
Vifa1g04008 | 671 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 475 | 487 | IPR008271 | GO:0004672|GO:0006468 | |
Vifa1g04008 | 671 | SUPERFAMILY | Protein kinase-like (PK-like) | 334 | 626 | IPR011009 | - | |
Vifa1g04008 | 671 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 38 | 659 | - | - | |
Vifa1g04008 | 671 | Pfam | Protein kinase domain | 355 | 554 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g04008 | 671 | FunFam | Cysteine-rich receptor-like protein kinase 10 | 146 | 250 | - | - | |
Vifa1g04008 | 671 | ProSiteProfiles | Gnk2-homologous domain profile. | 143 | 250 | IPR002902 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g04008 | Vifa-Chr1 | 616438398 | 616441010 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g04008 | 12 | 647 | Receptor kinase-like Gene Family | AT4G05200 | 41.592 | 1.07e-164 | 487 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Vifa1g04008 | Pkinase | 1.8e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g04008 | - | - | gmx:102669229 | 925.62 |