Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04008 ATGGACAAAGAAAGAATTTCTTCAGCTATGATTATGTTAATCATTTTAATGTTAAAATCTATCCACTTTGTTTCTGGTATAGACAATCCTATAGATACATATTGTCCTGATAATTTTCCACTTTACACTTCCAACACTTCATTCCACAAGAATCTCAAGCTTCTCATGGAAACTCTCTCTTCCAATATAGTAGCTTCAAACACAAGTTTCTTCAACAACACGTCAACAGGAGAAGGACTAGACAAAGTTTATGGACAAGCACTGTGCAGAGGGGACATGACAAATTCCACAGTTTGCAAAGAATGCATTGAGAAAGCAAGTAAAGATTTGATGAATAGGTGTAAGAGTGAGGATGCAATGATATGGTATGAACTTTGTCAAGTTCGGTATTCGTTTCAGATGTTCTTTACAAACGCGGTTTATACTGGAAAATATCCTAAGCAGAATGATCTAGAGAAGCATGTTTCGGATCCTATTAGTTTTCAACAGGTTTTGAATTATTTAATGAACAATATCTCAAACGAGGCTGCTTTTAGTCCTTCTAAGAACATGTTTGCAACAGCAGAAATCGAATTTTCTGACAAAAAAAGAACTTATGGACTCGTCGAATGTACGAAAGACATTTCTGAAACTGAATGCAGAAGTTGTTTGAGTTCTGCAATCATGGAACTAAATCAATGCTGCTCATATAGGGAAGGAGGGATTATTGTTAGTCGCAATTGCAACGTTCGATTCGATTTGTTTGAGTTTTTTAATGGTTCTTCATCATCAGTATCCCTTTTGATTTTCCCAACTTCCAAAGAAGGAAAATGGAAGCCTTGGATGTTTATCTTGACTATATGTGGCTCAGTTTTAACATTAGCTGCTATTATTGGGTTGTGCACTACTTGCCTCAGGCAGAAAAAGGACAAAGAAAGAGAAGAAGAAAGAAGCGAAAGGACGGTATTAGAAGAATTGTCTAGCACGAAGAATGTAGTAATCACACAAGAAGGTCAATTGATTAGCTCTGATGAAATGATGTTTATGACTTTAGAAACCATTAAGGCGGCTACCGGTGACTTTTCGGATATAAATAAGTTGGGACAAGGAGGGTTTGGTGTGGTCTACAAGGGGGTTCTACCAGATGGTAATGAAATAGCAGTTAAGAGATTATCGAGAAAGTCTTGGCAAGGTATAGAAGAATTAAAAAATGAGATCATTCTAATAGCTAAGCTTCAACACAAGAATTTGGTGAGATTGTTGGGATATGTCTTAGAAGGAAATGAAAAGATACTCATATATGAACTCGTGTCAAATAGAAGTCTTGATCAATTTATATTCGATCCAAACAAACGTCCTATACTTGATTGGAACACATGCTATGGCATCATCGGCGGCATAGCAAGAGGACTACTTTATCTACATGAGGAATCTCGGCTTAAAGTCATTCATCGCGACCTAAAGCCAAACAATGTGTTGTTAGACCATGATTTCATAGCCAAAATATCAGATTTTGGTATGGCTAGAATGTTTTCTGAGAATCAGAATACAGCAAACACAAAAAGAGTTGTGGGAACACATGGATATATGGCTCCAGAATATGCAATGGAGGGACTATTCTCAGTGAAATCTGATGTCTTCAGCTTTGGTGTAATTATGCTTGAAATCATCAGTGGGAAAAGAAATAGCGGATTTTACATAACCGAACTTGCCCCGACTCTACTGGCATATGCTTGGAGGATGTGGAATGAAGGAAAGGGGTTAGAAATTGTGGATCCTATATTATTGGAATCATGTATTAATTCGGAATCTGAAGTTCTTAGGTGCATTCATATTGGGCTCTTGTGTGTACAGGAAGATCTGCAACACAGGCCCACCATGTCAAATGTTGTGGTTCTCCTAGGAAGTGAATCAATGGTTCTTCCCCAACCAAGACAACCAGCATTTTCTTTAGGTAAGATGGTTCTCGTAGATCCTTCTACATCAACAAATCGTTCGGCAAATGAGAGTATATGGTCTAGTATTTCACCACGATGA 2016 0.3755 MDKERISSAMIMLIILMLKSIHFVSGIDNPIDTYCPDNFPLYTSNTSFHKNLKLLMETLSSNIVASNTSFFNNTSTGEGLDKVYGQALCRGDMTNSTVCKECIEKASKDLMNRCKSEDAMIWYELCQVRYSFQMFFTNAVYTGKYPKQNDLEKHVSDPISFQQVLNYLMNNISNEAAFSPSKNMFATAEIEFSDKKRTYGLVECTKDISETECRSCLSSAIMELNQCCSYREGGIIVSRNCNVRFDLFEFFNGSSSSVSLLIFPTSKEGKWKPWMFILTICGSVLTLAAIIGLCTTCLRQKKDKEREEERSERTVLEELSSTKNVVITQEGQLISSDEMMFMTLETIKAATGDFSDINKLGQGGFGVVYKGVLPDGNEIAVKRLSRKSWQGIEELKNEIILIAKLQHKNLVRLLGYVLEGNEKILIYELVSNRSLDQFIFDPNKRPILDWNTCYGIIGGIARGLLYLHEESRLKVIHRDLKPNNVLLDHDFIAKISDFGMARMFSENQNTANTKRVVGTHGYMAPEYAMEGLFSVKSDVFSFGVIMLEIISGKRNSGFYITELAPTLLAYAWRMWNEGKGLEIVDPILLESCINSESEVLRCIHIGLLCVQEDLQHRPTMSNVVVLLGSESMVLPQPRQPAFSLGKMVLVDPSTSTNRSANESIWSSISPR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04008 671 Gene3D - 146 250 IPR038408 -
Vifa1g04008 671 Gene3D - 31 135 IPR038408 -
Vifa1g04008 671 FunFam Cysteine-rich receptor-like protein kinase 10 308 429 - -
Vifa1g04008 671 ProSiteProfiles Gnk2-homologous domain profile. 30 135 IPR002902 -
Vifa1g04008 671 SMART serkin_6 354 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04008 671 CDD STKc_IRAK 360 624 - -
Vifa1g04008 671 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Vifa1g04008 671 Gene3D Phosphorylase Kinase; domain 1 313 429 - -
Vifa1g04008 671 FunFam Uncharacterized protein 430 633 - -
Vifa1g04008 671 Gene3D Transferase(Phosphotransferase) domain 1 430 633 - -
Vifa1g04008 671 ProSiteProfiles Protein kinase domain profile. 354 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04008 671 Pfam Salt stress response/antifungal 41 132 IPR002902 -
Vifa1g04008 671 Pfam Salt stress response/antifungal 156 246 IPR002902 -
Vifa1g04008 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Vifa1g04008 671 SUPERFAMILY Protein kinase-like (PK-like) 334 626 IPR011009 -
Vifa1g04008 671 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 659 - -
Vifa1g04008 671 Pfam Protein kinase domain 355 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04008 671 FunFam Cysteine-rich receptor-like protein kinase 10 146 250 - -
Vifa1g04008 671 ProSiteProfiles Gnk2-homologous domain profile. 143 250 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04008 Vifa-Chr1 616438398 616441010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04008 12 647 Receptor kinase-like Gene Family AT4G05200 41.592 1.07e-164 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g04008 Pkinase 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04008 - - gmx:102669229 925.62