Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04007 ATGACTCATCATCCTCCAACTCTTTCCAAATCCATTCAATTCATCCTTGTTTTCTGTACTCTCTATTTTCTTTCATTTGTCACCTTTGCAGACCCCCCATATGAAACTTGTTCCACAAGAAACATCTCTACAAATCGAAGTTCTTTCGAGAACAATCTAAGCAACCTACTCCTCTCTTTACCCTCTAATGTTTCAGCTTCAATCTCCAAATTTGGTAATACTTCTTCAGGAATTGGCCTAGATAGAGTTTATGGTCTCTACATGTGCCTCGACTTCGTTTCAAACGAAACTTGCCACAAATGTGTAGCAAACGCAATAGAAGACATTGTAAAACTCTGTCCTCAATCAGAAGAAGCAGTTGTATATGAAGAATTCTGTCAATTACGTTATTCAAATAAAAATTTCATAGGCTCCTTGAATGTTACCGGGAACATTGGGAAAGATAATGTACAGAATATTTCGGAACCTGAGAAATATGAGTCTGTTGTGAATAAGATATTGAATAATCTTATTGAGATAGCGTCTTTTGATGTTTCCATGAACATGTATGCAACTGGAAAAGTAGCTTTTGAAGATAAAACAGTATATGCTTTAGTGCAGTGTACAAGAGATTTATCAGCCAATGATTGCAGTAAGTGTCTGCAAAGTGCTATTGGAGATATACCAAGTTGTTGCTATGCCTCCATTGGTGCGCGAGTTTGGAGTCGTAGCTGTTATTTAAGATATGAGTTTTATCCATTTTATCTTGGTGAAACAGAATCCAAAAGTTCTTCAACTAACCAAGGAGGGAAAAAGAAATCAAGCAAAATATGGATGATTACTGCCATTGCAGTTGGGGTAGCCTTGGTGATAATAATTATCATTTTCTACTTATGCTTTATCAGAAATTGGCAAAGAAAAAATGGAAAAGGAAATATATCTAATGATTTCCCTTTTATTGATATTGGTTCTCTATGTGTGGCTACCAAAAACTTCTCCGATTCAAATAAGCTCGGGCAAGGTGGATTTGGTCCTGTTTACAAGGGTATACTTAGTGATGGCATGGAAGTGGCAATCAAGAGGCTCTCAATTTGTTCTGAGCAGGGTTCAGAAGAATTCATTAATGAGGTTATGTTGATATTGAAACTCCAACACAAAAATCTTGTAAAGCTTCTGGGATTTTGTGTTGATGGAGAAGAGAAGCTTCTTGTTTATGAATATTTGCCCAACGGTAGCCTTGATGTCGTCCTTTTTGAGCAGAGTGCACAGCTTGATTGGACCAAACGGGCTGATATAATAAATGGAATAGCAAGAGGAATTCTCTATCTTCATGAAGATTCTAGACTTCAAATAATACATAGAGATCTAAAAGCAAGCAACATATTGTTGGACTGTGACATGAATCCAAAGATTTCAGACTTTGGCATGGCAAGGATATTTGCAGGAAGTGAAGGCGAAGCTAACACTACCACAATAGTTGGCACATATGGATATATGGCTCCGGAATATGCAATGGAGGGTCTATATTCCGTAAAATCTGATGTTTTCGGCTTTGGAGTACTATTGCTTGAGATCATTACAGGTAAACGTAATGCAGGTTTTTGTTACTCCAAAAGCGCTTCTAGTCTAGTAGCATATGCATGGCATCTATGGAATAACGGAAATGGATTGGAATTAAGGGATCCGTTGTTATTATGTCCCGAAGACCAGTTTTTGAGATACATGAATATTGGATTGCTATGTGTTCAAGAAGATGCATTTGATAGGCCAACCATGTCTTCTGTTGTTTTGATGTTGATGAATGAATCTGTAATGCTTGGCCAACCAGAAAAACCTCCTTTCTCTGTAGGGAGACTCAATGTTAATGATCCAAATGTCTTAGATTTGGTAGAATATTCAGTCAATTTCTTAACTGTTTCTGATATCTTGCCAGTATAA 1917 0.3709 MTHHPPTLSKSIQFILVFCTLYFLSFVTFADPPYETCSTRNISTNRSSFENNLSNLLLSLPSNVSASISKFGNTSSGIGLDRVYGLYMCLDFVSNETCHKCVANAIEDIVKLCPQSEEAVVYEEFCQLRYSNKNFIGSLNVTGNIGKDNVQNISEPEKYESVVNKILNNLIEIASFDVSMNMYATGKVAFEDKTVYALVQCTRDLSANDCSKCLQSAIGDIPSCCYASIGARVWSRSCYLRYEFYPFYLGETESKSSSTNQGGKKKSSKIWMITAIAVGVALVIIIIIFYLCFIRNWQRKNGKGNISNDFPFIDIGSLCVATKNFSDSNKLGQGGFGPVYKGILSDGMEVAIKRLSICSEQGSEEFINEVMLILKLQHKNLVKLLGFCVDGEEKLLVYEYLPNGSLDVVLFEQSAQLDWTKRADIINGIARGILYLHEDSRLQIIHRDLKASNILLDCDMNPKISDFGMARIFAGSEGEANTTTIVGTYGYMAPEYAMEGLYSVKSDVFGFGVLLLEIITGKRNAGFCYSKSASSLVAYAWHLWNNGNGLELRDPLLLCPEDQFLRYMNIGLLCVQEDAFDRPTMSSVVLMLMNESVMLGQPEKPPFSVGRLNVNDPNVLDLVEYSVNFLTVSDILPV 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04007 638 Gene3D Phosphorylase Kinase; domain 1 295 400 - -
Vifa1g04007 638 SMART serkin_6 325 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04007 638 FunFam Cysteine-rich receptor-like protein kinase 10 294 400 - -
Vifa1g04007 638 ProSiteProfiles Gnk2-homologous domain profile. 141 247 IPR002902 -
Vifa1g04007 638 SUPERFAMILY Protein kinase-like (PK-like) 307 592 IPR011009 -
Vifa1g04007 638 Gene3D - 31 135 IPR038408 -
Vifa1g04007 638 Gene3D - 145 247 IPR038408 -
Vifa1g04007 638 ProSiteProfiles Gnk2-homologous domain profile. 30 135 IPR002902 -
Vifa1g04007 638 CDD STKc_IRAK 331 594 - -
Vifa1g04007 638 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 401 600 - -
Vifa1g04007 638 Gene3D Transferase(Phosphotransferase) domain 1 401 600 - -
Vifa1g04007 638 Pfam Salt stress response/antifungal 37 132 IPR002902 -
Vifa1g04007 638 Pfam Salt stress response/antifungal 151 244 IPR002902 -
Vifa1g04007 638 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 608 - -
Vifa1g04007 638 FunFam Cysteine-rich receptor-like protein kinase 10 144 247 - -
Vifa1g04007 638 ProSiteProfiles Protein kinase domain profile. 325 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04007 638 Pfam Protein tyrosine and serine/threonine kinase 328 590 IPR001245 GO:0004672|GO:0006468
Vifa1g04007 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04007 Vifa-Chr1 616434858 616437470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04007 15 607 Receptor kinase-like Gene Family AT4G05200 44.762 1.96e-164 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g04007 PK_Tyr_Ser-Thr 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04007 - - gmx:102669364 870.152