Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04006 ATGTCAAACATATGGAGATGCAAATTGTTATCATCATTACTAACATTGTTGATAATTTCGTCTTGTGTCTATGTATGTGAAGGTCAAGATCCAACGGCAGTGGCTCTCCCTCCAGCCGCGGAAATATGTGACGGAGTTTTTATTTCCTACCAACTACTCGATCGAAGGAAGGAATTTCCCCATGTCAAGAACGTCACAGCGCAATCATGGGCCTTTAATGCGACCGCAAACGTTCTCAACACGGGGAAAGATGTTCTTAGATCATGGAAGTTGTTTATAGGATTTCAACATGATGAGATCCTTGTCTCCGCCGACGGAGGTATCCCGTTTGAAGCGGGAGAGTTACCGGCGGCGGTTGGAAATGGGACAACCTTAGTTGGAAGTAATTTACCAGATTTAGAAACTTCTATTAATACCGCTAATGATTTGGACCAAATTCAAGCATTGATTAAAATTTCTGGTACACAGTTTGGAGTTAAGCCACCTGGACTTCCAATGCCTAAAAACATCAAGTTGGACAATGATGGATATAGATGCCCTCGCCCAACTACTAAGAAGAGAATCATGCAGGCATGTTGTAAAAGAGATCCAAAATACAAAAAGAAACTTCTAAAGGCAAAATTCATACCACGTCAAAAAGGTGACCTAACAATATCCTATGATGTTCTTCAATCATATGACAACAACTATCTTGTTCAAGTAACAATGGAAAATCACAGTCCTTTAGGACGTTTAGATCGTTGGAACCTAACATGGGAATGGACAAGAGGTGAATTCATACAACAAATGAAAGGCGCATTCACGCGCGAGGTCGATTATTCAGGTTGCATCTATGGTCCTCCTGGACAGTTTTTCAAAGACATGGATTTCTCTAATGTTATGAATTGTCAAAAACATCCTGTCATCAGTGATATGCCACCAGAGAAATATAATGATACTGATCTTGGTAAAATACCGTTTTGTTGTCGAAACGGTTCGCTTTTACCTATTATTATGGATCCATCACAATCCAAATCCATTTTTCAAATGCAAGTTTTCAAAATTCCACCTGATTTGGATAAAAAATCTCTATTTCCACCAGCAAAATGGAAAATAACGGGTGTTCTAAACCCTGCTTATCAATGTGGACCGCCGTTGAAAGTCCAACCGACGATACTTCCAGACAAGAGAGGACTTGATGCTATAAACTATGCTCTAGCAAGTTGGCAAATTATTTGCAATATAACAAAACCTAAACAAAGAAAAACTAGATGTTGTGTTTCCTTTTCTGCTTTCTATAATGAATCTGTTGTTCCATGCAACACGTGTGCATGTGGTTGCGATGAAGACGAAGATAACGGTCGTTGTAACCCCGATGCGAAAGCAATGTTTTTACCTTCAGAAGCACTTCTTGTTCCTTTTGAAAATCGAACGAAGAAAACTGTTGCTTGGGCTAAGTTAAAGCATTTTCAAGTACCTAGGAAGTTACCATGTGGTGATAATTGTGGAGTTAGCATAAATTGGCATGTAGCTTCTGATCATAAAGGTGGTTGGAGTGCAAGAATCACTTTGTTTAATTGGAAGCCTCTTCCTTTTAAGGATTGGTTCACTGCCTTGCAGTTCAAGAAAGGTGTTTCTAATGGTTTTGAGAAAGTTTATTCTTTTAATGGAACATTGCTTAGAACATTCAACCACACTATTTTCATGCAAGGAATAGAAGGATCAAACTATTTGATAGGTCAAGATAATGATACAAATCCAAAGGTTCCTGGAAAACAACAATCTGTTATTTCTTTTACAAAAAAGTTTATGCCAGGTATGAAAATATCTAAAGGTGATGGGTTCCCTACAAAGGTGCTTTTCAATGGAGAAGAGTGTTCTATTCCAACTCATTTTCCTATGAAAAATGGAAACCAACGTAATGTATATTTAGTACAAGAACTGTTAATCTTAGTTTTAGCTTTTACCATGATTCAAATATTGTATTAG 1968 0.3791 MSNIWRCKLLSSLLTLLIISSCVYVCEGQDPTAVALPPAAEICDGVFISYQLLDRRKEFPHVKNVTAQSWAFNATANVLNTGKDVLRSWKLFIGFQHDEILVSADGGIPFEAGELPAAVGNGTTLVGSNLPDLETSINTANDLDQIQALIKISGTQFGVKPPGLPMPKNIKLDNDGYRCPRPTTKKRIMQACCKRDPKYKKKLLKAKFIPRQKGDLTISYDVLQSYDNNYLVQVTMENHSPLGRLDRWNLTWEWTRGEFIQQMKGAFTREVDYSGCIYGPPGQFFKDMDFSNVMNCQKHPVISDMPPEKYNDTDLGKIPFCCRNGSLLPIIMDPSQSKSIFQMQVFKIPPDLDKKSLFPPAKWKITGVLNPAYQCGPPLKVQPTILPDKRGLDAINYALASWQIICNITKPKQRKTRCCVSFSAFYNESVVPCNTCACGCDEDEDNGRCNPDAKAMFLPSEALLVPFENRTKKTVAWAKLKHFQVPRKLPCGDNCGVSINWHVASDHKGGWSARITLFNWKPLPFKDWFTALQFKKGVSNGFEKVYSFNGTLLRTFNHTIFMQGIEGSNYLIGQDNDTNPKVPGKQQSVISFTKKFMPGMKISKGDGFPTKVLFNGEECSIPTHFPMKNGNQRNVYLVQELLILVLAFTMIQILY 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04006 655 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Vifa1g04006 655 Pfam COBRA-like protein 230 409 IPR006918 GO:0010215|GO:0016020
Vifa1g04006 655 PANTHER COBRA-LIKE PROTEIN 7 9 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04006 Vifa-Chr1 616426916 616429241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04006 12 647 COBRA Gene Family AT3G20580 56.000 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04006 - - gmx:100799716 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04006 1 616426916 616429241 Vifa1g04006 1 616426916 616429241 ECH