Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04003 ATGTATGGTCCTCCTCCTCCACCTCCCTATCACAGTCACATTATGAATATATATGATAATCAGCTAGCAAGTACAAGACATGAAGATTATGAAATCATCCTCGAAGAAGAACAACCTTCAAGTGATGATCAACAATCTAACCAACGTCCCAAAAAAAGAACGTACCGCCGCCATACACAAGAGCAGATTCAAGAAATGGAAGCTGCCTTCAGGAAGAATCCTCACCCAGATGATAAGCAAAGAAAAGAGATGGGTGCTCGGTTAGGGTTAGAGCCTCTGCAAATCAAGTTCTGGTTTCAAAACCGGCGTACTCAGCTTAAGGTTCAAAATGAAAGGGAAGAGAATAGTGCTTTGAAGGCTGAGATTGAAAAACTTCAAAGTGAGATGAATAGGTACAAGGAGGCTATAGGTAATACTGCATGCAACGTGTGTGGAAGCATAGCTACCATTGGTGAAATGTCCCGTGAGGAGCAGCAACTGAAGTTGGAGAATGCTCTCTTAAGAAAAGAGCTTGAAAAGTTTGCGGGCGGGGGCGAGACATCGACGAATCCTACGGATACTCATACCATCATATCATCCTCAAACAACAGCAATCACGCGCCTTCGCGGTCTATCAATGTTCGAGTTGTTGGGAGGACTAGTAACTATAATGGAGCACAAAATGGAATGGTAGGAGAAGCATATACTGGTGGTAATGGTGGTGAGCTTACAAGTTCTTTAGTTCCAGCTAGAGAATATGTTGATGACAAACGCAGTATTATTGAGCTTGCTGTGTTAGGAATGGATGAAGTAATGAGATTGGCTAAGACATGTGGGCCCCCTCTATGGCTCTCTACCAACTATTACACTGAGATTCTAAATGCAGATGAATACATGAAGAATTTCCTTAGGGTTAATGGTCCTAATCCATTTGGGTTAAGGCCTGAAGGTTCTAAAGAGTCTGGTGTGATCATTATGAATCCTATTAATCTGGTTGATATCCTTATGGATGTGAATCGATGGTCAAGTATGTTTTGCGGCATTGTTGCAAGAGCATCAACAAACAAAGTACTGTCAACTGGAGTGGCAGGAAACTACAATGGAGCCTTGCAAGTGATGATAGCTGAATTTCAAGTTCCTTCACCATTTGTTCCTATTCGCGAAAACTATTTCGTGCGATACTGTAAACTGCATGAAGATGGTATATGGGCAGTGGTTGATGTTTCATTGGATAATCTTCTACCTGCATCTAGCTGTTGTTCTGTCCCAAGACCCCAAAGAAGACCCTCTGGTTGTTTAATTCAAGAACAACCAAATGGTTACTCTAAGGTTACATGGATTGAACATGCACTAGTGAATGATAACGCGGTGCAGAATTTTTATGCACCTCTAATTAATTCTGGACTCGCATTTGGCGCGAAACGCTGGGTGGCTACGTTACAAAGACAATGCGAACGTCTGGCGTGTTCAATGTCCAACAACATACCAATTGCTGGAGATCTCGGAGTTATGATGAGTCCAGAGGGAAAGAAAAGTATGTTGAAGCTCGCGGAACGAATGGTGACTAGCTTTAGTACTAGTATTGGTGCTGCTTCAAATCATGCTTGGACAAACGTACACTCAGATGGATCAGAGCATGTGGTTAAGGTCATGACAAAGAAATACGTCGATGAATCGGGTAGTGGCAGCAGATCCCCCGGTGTAGTGCTTAGTACTGCTACTTCTTTTTGGCTTCCCATTCCTCCAAGAAGGACTTTTGATTTTCTTCGTGACGAAAACACTAGATGTCAGTGGGATATTCTCTCGAACGGAGGTATAGTTACAGAAATGGCTCACATTGCAAATGGTCGTGATTCTGGAAGCGCTGTCTCTTTACTTCGAGTTAACAGTTCGAACTCAATGCAGAGTAATATGGTGATACTGCAAGAGAGTTGTGCTGATATAACAGGTTCATATGTAGTATATGCACCTGTGGATATATCTTCCATGAATGTAGTCTTGAATGGAGAAGATTCGAATACTGTTTCTCTAATTCCATCCGGATTCGCTATTTTTCCGGACGGGATTCTACAAAATCGAGAACCGATTACGAATGTTGGATCTGGAGGTTCTCTTATCACAGTTGGATTTCAGATTTTGGTTGATTCTGTTCCACATGCAAGACTAGCTTTGGGTTCTGTCAGCACTGTTCAGCAATTGATCAAGTCCACTGTGGAAAGGATTAAGGTTGCAGTGATGCCTAATGTCACGCTTAATGTCACCTAA 2244 0.4238 MYGPPPPPPYHSHIMNIYDNQLASTRHEDYEIILEEEQPSSDDQQSNQRPKKRTYRRHTQEQIQEMEAAFRKNPHPDDKQRKEMGARLGLEPLQIKFWFQNRRTQLKVQNEREENSALKAEIEKLQSEMNRYKEAIGNTACNVCGSIATIGEMSREEQQLKLENALLRKELEKFAGGGETSTNPTDTHTIISSSNNSNHAPSRSINVRVVGRTSNYNGAQNGMVGEAYTGGNGGELTSSLVPAREYVDDKRSIIELAVLGMDEVMRLAKTCGPPLWLSTNYYTEILNADEYMKNFLRVNGPNPFGLRPEGSKESGVIIMNPINLVDILMDVNRWSSMFCGIVARASTNKVLSTGVAGNYNGALQVMIAEFQVPSPFVPIRENYFVRYCKLHEDGIWAVVDVSLDNLLPASSCCSVPRPQRRPSGCLIQEQPNGYSKVTWIEHALVNDNAVQNFYAPLINSGLAFGAKRWVATLQRQCERLACSMSNNIPIAGDLGVMMSPEGKKSMLKLAERMVTSFSTSIGAASNHAWTNVHSDGSEHVVKVMTKKYVDESGSGSRSPGVVLSTATSFWLPIPPRRTFDFLRDENTRCQWDILSNGGIVTEMAHIANGRDSGSAVSLLRVNSSNSMQSNMVILQESCADITGSYVVYAPVDISSMNVVLNGEDSNTVSLIPSGFAIFPDGILQNREPITNVGSGGSLITVGFQILVDSVPHARLALGSVSTVQQLIKSTVERIKVAVMPNVTLNVT 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04003 747 ProSiteProfiles START domain profile. 246 482 IPR002913 GO:0008289
Vifa1g04003 747 CDD homeodomain 52 110 IPR001356 GO:0003677
Vifa1g04003 747 MobiDBLite consensus disorder prediction 32 60 - -
Vifa1g04003 747 SUPERFAMILY Bet v1-like 282 480 - -
Vifa1g04003 747 SUPERFAMILY Bet v1-like 500 734 - -
Vifa1g04003 747 SMART HOX_1 51 113 IPR001356 GO:0003677
Vifa1g04003 747 SUPERFAMILY Homeodomain-like 38 109 IPR009057 -
Vifa1g04003 747 CDD START_ArGLABRA2_like 250 478 - -
Vifa1g04003 747 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 49 738 IPR042160 -
Vifa1g04003 747 FunFam Homeobox-leucine zipper protein HDG1 38 125 - -
Vifa1g04003 747 Pfam Homeodomain 52 107 IPR001356 GO:0003677
Vifa1g04003 747 Coils Coil 101 142 - -
Vifa1g04003 747 SMART START_1 255 479 IPR002913 GO:0008289
Vifa1g04003 747 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Vifa1g04003 747 Coils Coil 150 170 - -
Vifa1g04003 747 Gene3D - 37 125 - -
Vifa1g04003 747 Pfam START domain 274 479 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04003 Vifa-Chr1 615594905 615598322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04003 1 742 Homeobox Transcription Factor Family AT4G04890 58.322 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g04003 START 3.6e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04003 K09338 - qsu:112016283 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04003 1 615594905 615598322 Vifa1g04003 1 615594905 615598322 ECH