Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03990 ATGGAACACACGATTGTGACTGTGCTTCTTCTCCTTATGCTTCTTCTCATCTTCATCTTCCTTTTTTTTCTCTTCAAACCATGGCGCTTCTTTTTCTCTTCTCGTTTTCGTTCTTCAATCCAACAGGGTTCTGTTGGTGAATTAGAGAGACCACTCGTTGTTGATGATGGTGCAAATGGTGAATTGCCGAGAGATTATGATCTTGAAGGTGCGTGTTATCCTAGTGAAGTTAATTTCCGTTCTCCCAGAACACATGGACAAGGACTTTTTCATAAGCCAAGGCTTCATAACCTTTCTATTTCGCCTAATTTTCATCAACCTGCCTCCGCCGCCGCCGCTGATACTTTGATTGTTGATGTTATCTCTGATCATTCTGACCCCGTTGCTGCTGATGCTCAAACTTTTAAGCTCCCTCCTCCACAGGTTTTACCTCAAGTTCCCAAACAGAGTTATCAGAATGATAGGTTGCAGGATTTTGTGCAAAAAGATATCACTGATCAAAGAAGTTGCCTCACTTTGGAGGTTATCAGTGGTCCTTCTTGTGGACAACGTTGGTCTGTTCAGTCGACAAATCCCTCGCATCTACCTCTGACGTTGGGAAGGGTTTCTCCTAGTGATTTGTTGATCAAGGACTCGGAAGTTTCGGGAAAGCATGCTTTTATCAACTGGAATTTGGATAATTTGAAATGGGAGCTGGTTGATATGGGTAGCCTGAATGGAACACTTCTGAATTCTAAGTCAATAAACCATCCTGACACTGGAAGTAGGCATTGGGGAGATCCAATGAGTCTTGCTAATGGAGACGTGATAACACTTGGAACAACATCGAAAATAATTGTTCATATTACTTCACAAAATCATCATCACATTCCCTTTGGAGTTGGTATGACCTCAGACCCCATGTCTTTGCGTCGAGGAGGAAAGAAACTTTCTATGGAGGATGTTTGCTATTATCATTGGCCTTTACCTGGGCTGGATCAGTTTGGTATTTTTGGCATTTGTGATGGGCACGGTGGTGATGGGGCTGCTAAAGCTGCTAGCAAACTTTTTCCTGAAGTAATTGCTAGTATATTATCGGATTCTTCAAAAAGGGAGAGGGTTTTCTCACTTCGTGATGCTTCAGATATTCTTCGAGATGCATTTTCTCAAACAGAAGCACGCATAAACAACTTTTATGAGGGATGTACAGCAACATTGCTCCTGGTGTGGGCTGACTGTGATGATAATTTCTATGCACAGTGTGCAAATGTTGGAGATTCTGCCTGCATTATGAGTGTTAATGGGCAACAAATCAAAATGACAGAAGATCACAAGATAAGCAATTTTTCTGAAAGACGCAGAATTGAAGAGTCGGGGGAACCATTGAAAGATGGGGAAACACGACTATATGGTATAAATCTTGCAAGGATGCTCGGCGACAAATTCCTAAAACAACAGGATTCTCGGTTCAGTTCACAACCTTATATAAGTGAGGCTGTGCATATTCACCAAGCAAGCAAGGCTTTTGCTGTTCTAGCTAGTGATGGGTTATGGGACGTCATCAGCATGAAGAAGACAATTCAGTTAGTGCTTCAGATGAGGGAGCGACACAATACAGAAGGCGATAATACAGCAGAAAAGATTGCTAGTTTGTTGTTGAATGAGGCTAGAACACTCAAAACGAAGGATAATACCTCCATAATATTCTTAGATTTTGATACATTCAATAGATTCTCGTGTAAAGTTGAATCCTAG 1734 0.4158 MEHTIVTVLLLLMLLLIFIFLFFLFKPWRFFFSSRFRSSIQQGSVGELERPLVVDDGANGELPRDYDLEGACYPSEVNFRSPRTHGQGLFHKPRLHNLSISPNFHQPASAAAADTLIVDVISDHSDPVAADAQTFKLPPPQVLPQVPKQSYQNDRLQDFVQKDITDQRSCLTLEVISGPSCGQRWSVQSTNPSHLPLTLGRVSPSDLLIKDSEVSGKHAFINWNLDNLKWELVDMGSLNGTLLNSKSINHPDTGSRHWGDPMSLANGDVITLGTTSKIIVHITSQNHHHIPFGVGMTSDPMSLRRGGKKLSMEDVCYYHWPLPGLDQFGIFGICDGHGGDGAAKAASKLFPEVIASILSDSSKRERVFSLRDASDILRDAFSQTEARINNFYEGCTATLLLVWADCDDNFYAQCANVGDSACIMSVNGQQIKMTEDHKISNFSERRRIEESGEPLKDGETRLYGINLARMLGDKFLKQQDSRFSSQPYISEAVHIHQASKAFAVLASDGLWDVISMKKTIQLVLQMRERHNTEGDNTAEKIASLLLNEARTLKTKDNTSIIFLDFDTFNRFSCKVES 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03990 577 Pfam Protein phosphatase 2C 304 558 IPR001932 -
Vifa1g03990 577 ProSiteProfiles PPM-type phosphatase domain profile. 293 565 IPR001932 -
Vifa1g03990 577 CDD FHA_PP2C70-like 171 281 - -
Vifa1g03990 577 ProSitePatterns PPM-type phosphatase domain signature. 330 338 IPR000222 GO:0043169
Vifa1g03990 577 FunFam Protein phosphatase 2C 70 301 572 - -
Vifa1g03990 577 SMART FHA_2 196 248 IPR000253 GO:0005515
Vifa1g03990 577 SUPERFAMILY SMAD/FHA domain 169 280 IPR008984 GO:0005515
Vifa1g03990 577 CDD PP2Cc 305 565 IPR001932 -
Vifa1g03990 577 SMART PP2C_4 287 563 IPR001932 -
Vifa1g03990 577 PANTHER PROTEIN PHOSPHATASE 2C 303 562 IPR015655 GO:0004722|GO:0006470
Vifa1g03990 577 Gene3D - 302 574 IPR036457 -
Vifa1g03990 577 ProSiteProfiles Forkhead-associated (FHA) domain profile. 197 248 IPR000253 GO:0005515
Vifa1g03990 577 Pfam FHA domain 198 273 IPR000253 GO:0005515
Vifa1g03990 577 FunFam Protein phosphatase 2C 70 166 300 - -
Vifa1g03990 577 Gene3D - 165 301 - -
Vifa1g03990 577 SUPERFAMILY PP2C-like 306 566 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03990 Vifa-Chr1 613622365 613628617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03990 23 567 PP2C-type Phosphatase Gene Family AT5G19280 56.250 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03990 K01090 - gmx:100170642 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03990 1 613622365 613628617 Vifa1g03990 1 613622365 613628617 ECH