Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03989 ATGGAGCAAGCATTGATTGGTGCACTGAACTATGTATCTCGAAACCTTCCTCTTCCTCCTGAACTCTTCAACACCGTTTCTTCTATCTGTTATGGATCTGAACCCAAACCCTCACCTCACGATTCCTCGGATGATGTGAGCAATTCTACACAAGACGAAGATTTATTGACTGAGCTTCAAGATGCAGTGTCCAAACAACGACCTAATTGTGACTCTAGTTCAAAATTAAACAAAGCAATCAAAATTCGTTCTCTAACTCGGATTCAGAACCGCTTAACTCAGCTTGAAGGATTGCCTTCCAGGTTGGGAGATGATTTACAAACAAGGTGTTTGCTCGAGCTTTATGGACTAAAGCTGGCGGAGTTGCAGGGGAAGGTTAGGATGGAAGTGAGCTCTGAATATTGGCTTAATGTTAAATGTGCATATCCCGACAGACAATTATTTGACTGGGGCATGATGCGGTTGCGACGTCCTCCTTATGGTGTTGGAGATCCATTTGCCATTGATGCTGCCGATGATCAAATAAGGAAGAAGCGGGACACGGAGAGGCTATCTAGATTAGAAGAGCAAGCAAAAAGTCACACAGAGACCAGAACAAGAAGATTTTTTGCAGAAATACTGAATGCTGTGCGTGAGTTCCAGTTACAAATCCAAAGTTCATTGAAGAGAAGAAAACAGAGGAATGATGCCGTTCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACTCGGGCAGAGAAATTGAGATTCCAAGCTTTAAAGGCTGATGATCAGGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTGCTTGTAAATTTGGGAGCAGCGGTTCAACGTCAAAGAGACTCCAAGCAATCAAATGGTATTGAACCCTTGGAAAATTCAGAGGCTTGTTTACCACAGTCAGATGCTTTGAAGAATGAAATTTCTAAGGAATCACCTCTTGATGAAGACGTGGATTTAATGGATTCTGATCATAATGATGACACCGGTGATTTACTTGAAGGCCAGCGGCAATACAATTCTGCCATACACTGCATTCAAGAAAAGGTAACCGAGCAACCATCTACTCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAATTTAAATGGAATTTTAGCTGATGAAATGGGGCTTGGAAAGACAATACAAACCATTTCTTTGATAGCATATCTTTTGGAATACAAGGGTGTGACTGGCCCTTTTTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAGCGAGTTCTCAACATGGGCTCCTAGCATTACAGCTGTTTTATACGATGGACGGATGGATGAGAGGAAAGCAATAAAGGAAGAACTCTCAAGGGAGGGAAAATTTCATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTGAAGAAAATTTATTGGAAATACTTGATTGTTGATGAAGGGCATCGATTGAAAAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTAGCTATCACATTGAACGAAGACTTCTGTTGACCGGTACCCCAATTCAGAACAGCCTGCAGGAATTGTGGTCCCTGCTCAATTTTCTCCTCCCAAGCATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCCCCCTTTGCTGATCGAGTTGATGTATCCTTAACAGATGAAGAACAATTATTGATTATTCGCCGTCTGCATCAGGTAATAAGGCCCTTCATACTAAGAAGGAAAAAGGCTGAGGTAGAAAAGTTTCTTCCTGGGAAATCTCAGGTCATACTGAAATGTGACATGTCAGCCTGGCAGAAAGTGTATTATCAACAAGTGACTGACGTGGGCAGAGTTGGGTTAGACAATGGTTGTGGAAAATCAAAGAGTCTACAAAACTTGACAATGCAACTCAGGAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAAACTATGATATATATAATCGTAAGGAGGAGATTGTCAGAGCATCAGGGAAATTTGAACTTCTTGACCGCTTGCTTCCAAAACTCCGTAGAGCTGGACATAGAGTCCTCCTTTTTTCACAAATGACTCGTCTCATGGACATTCTTGAAGTTTATCTTCAACTTCATGATTATAAATTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGCTCCCTTCTAAAGAAATTCAATGCTCCCGACTCTCCATATTTTATGTTTCTCTTGAGCACTCGTGCCGGAGGACTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCACAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGACAGAAAAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCAGTTGAAGAGGTGATTTTAGACCGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATCCAGGCAGGCCTTTTCAACACAACATCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTAGTAGCTCACTTGGAACAGATGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCAGCTCGATCCGATGAGGAATTTTGGCTGTTTGAGAGAATGGACGAAGATAGAAGACAAAAGGAGAATTACAGATCTCGTCTCATGACAGAGCATGAACTTCCAGATTGGGTATACTCTGCAGTAAATAAGGATGATAAGGTCAAAGCTTTTGACAGCAGTGGTATTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATATGTTAAGTGATCTACAATGGATGAAGGCTGTGGAAAATGGACAAGATGTATCTAGCCTTTCAGCTAAAGGAAAAAGAAGAAACCTCCTCCCTGCTGACAGCCATGCACAAATGAGTGATGACACTGTGGCAGAAGAAAGGTTGTTAGAGTTAAGCAACACCGTGGAAAATGAGAGATCAAGTGAAGATACTTTCAATGCGACCCCTGCCTCTAAGAGACTAAAACATGAAGAAATAAGTTCCCATAAACATGAAAAAGTGGACGTTGGTGGAAGTAGTTTGAAGGAGCGTGTATTTTCTTGGAATGTTCACAGAAAGAAAAGGTCAAGCTATCTTAGCCAAGGTTCATTATCTCATACCAGAGGGCAGAATGCAAATGGAAGAAGGTCAAGCTAA 3237 0.4143 MEQALIGALNYVSRNLPLPPELFNTVSSICYGSEPKPSPHDSSDDVSNSTQDEDLLTELQDAVSKQRPNCDSSSKLNKAIKIRSLTRIQNRLTQLEGLPSRLGDDLQTRCLLELYGLKLAELQGKVRMEVSSEYWLNVKCAYPDRQLFDWGMMRLRRPPYGVGDPFAIDAADDQIRKKRDTERLSRLEEQAKSHTETRTRRFFAEILNAVREFQLQIQSSLKRRKQRNDAVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSKQSNGIEPLENSEACLPQSDALKNEISKESPLDEDVDLMDSDHNDDTGDLLEGQRQYNSAIHCIQEKVTEQPSTLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLLEYKGVTGPFLIVAPKAVLPNWVSEFSTWAPSITAVLYDGRMDERKAIKEELSREGKFHVLITHYDLIMRDKAFLKKIYWKYLIVDEGHRLKNHECALARTLDSSYHIERRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGCGKSKSLQNLTMQLRKCCNHPYLFVGNYDIYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEVYLQLHDYKFLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILDRAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFERMDEDRRQKENYRSRLMTEHELPDWVYSAVNKDDKVKAFDSSGITGKRKRKEVVYADMLSDLQWMKAVENGQDVSSLSAKGKRRNLLPADSHAQMSDDTVAEERLLELSNTVENERSSEDTFNATPASKRLKHEEISSHKHEKVDVGGSSLKERVFSWNVHRKKRSSYLSQGSLSHTRGQNANGRRSS 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03989 1078 Pfam SNF2-related domain 380 668 IPR000330 GO:0005524|GO:0140658
Vifa1g03989 1078 Gene3D - 612 832 IPR027417 -
Vifa1g03989 1078 MobiDBLite consensus disorder prediction 327 346 - -
Vifa1g03989 1078 MobiDBLite consensus disorder prediction 294 315 - -
Vifa1g03989 1078 SMART ultradead3 373 566 IPR014001 -
Vifa1g03989 1078 MobiDBLite consensus disorder prediction 33 52 - -
Vifa1g03989 1078 FunFam Chromatin structure-remodeling complex protein SYD 368 611 - -
Vifa1g03989 1078 MobiDBLite consensus disorder prediction 1055 1078 - -
Vifa1g03989 1078 PANTHER SNF2/RAD54 HELICASE FAMILY 171 996 - -
Vifa1g03989 1078 Pfam Helicase conserved C-terminal domain 688 801 IPR001650 -
Vifa1g03989 1078 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 389 555 IPR014001 -
Vifa1g03989 1078 SMART SnAC_2 894 955 IPR029295 GO:0042393
Vifa1g03989 1078 FunFam Probable ATP-dependent DNA helicase CHR12 608 907 - -
Vifa1g03989 1078 CDD SF2_C_SNF 679 812 - -
Vifa1g03989 1078 Gene3D - 368 611 IPR038718 -
Vifa1g03989 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 602 IPR027417 -
Vifa1g03989 1078 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 691 858 IPR001650 -
Vifa1g03989 1078 SMART helicmild6 717 801 IPR001650 -
Vifa1g03989 1078 MobiDBLite consensus disorder prediction 1001 1038 - -
Vifa1g03989 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 856 IPR027417 -
Vifa1g03989 1078 Coils Coil 177 197 - -
Vifa1g03989 1078 MobiDBLite consensus disorder prediction 1016 1038 - -
Vifa1g03989 1078 Pfam Snf2-ATP coupling, chromatin remodelling complex 890 955 IPR029295 GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03989 Vifa-Chr1 613111981 613120496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03989 684 819 RAD5 or RAD16-like Gene Family AT5G43530 38.406 6.47e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa1g03989 SNF2_N 4.4e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03989 - - gmx:100775993 1752.64