Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03988 ATGAACACTCGTTTTTACGCGAAAATTGAAAATATCAAATTTAATTTAATAATAATAACGGTGGGGCTTTCTGTGTCGAATCGCCTTTTCTCCTTTTTGAGCCACTGTTGCCTCAACTTGTTTGTTTCAGAATCAAATATAATAGTTGTTACTGTTGATTTCAGGCTCCTTCCACTACATCCTCTTCCTGCAGCTTATGAAGACGGTTGGACTTCTCTCCAATGGATTGCTTCACATACAAGTAATGACACATACAATAATAACTTTGAAAGAGAATCATGGTTACTAGATTATGGTGATTTCGACAAAGTTTATGTAGGTGATGTTAATTGTGCTAACATTGCTCATGACTTAGCTATGCGTGCTGAATCTGAAACATTACCAAACAACCTTAAAATATTGGGTGCATTACTATGTTGTCCTTTTTTCTGGGCCTCGACCCCAATTGGGTCAGAGCCTGTGGAGGAGCATGAGAGTAGCTTGGCTATGAAAGTGTGGAACTTTGTGTAG 510 0.3824 MNTRFYAKIENIKFNLIIITVGLSVSNRLFSFLSHCCLNLFVSESNIIVVTVDFRLLPLHPLPAAYEDGWTSLQWIASHTSNDTYNNNFERESWLLDYGDFDKVYVGDVNCANIAHDLAMRAESETLPNNLKILGALLCCPFFWASTPIGSEPVEEHESSLAMKVWNFV 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03988 169 Pfam alpha/beta hydrolase fold 35 154 IPR013094 GO:0016787
Vifa1g03988 169 Gene3D alpha/beta hydrolase 22 168 IPR029058 -
Vifa1g03988 169 SUPERFAMILY alpha/beta-Hydrolases 35 153 IPR029058 -
Vifa1g03988 169 PANTHER ARYLACETAMIDE DEACETYLASE 30 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03988 Vifa-Chr1 613109680 613111119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03988 16 158 Carbohydrate Esterase AT1G49640 36.806 1.01e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03988 - K13258 gmx:547489 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03988 1 613109680 613111119 Vifa1g03988 1 613109680 613111119 ECH
Vifa1g03988 1 613109680 613111119 Vifa3g03215 3 923537790 923538764 PCT