Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03987 ATGGAGCTTCAGAAGCATCCAGATCATAACCTACCGGAGAAGAAAGGCCAGAAAAGGAAACTGGAGGAGGATTCTCAACACGACTCACAGATCTCTCTTCCTCCCACCGGAGACGCACGTGACGCACTTATATCCGACGTCAACCAACACGTTTCAATTCTCCTTTCCACTTTTTCATGGAACGAATCCGACAGAGCTTCTGCTAAGCGCGCCACACACGCCCTCGCGGATCTTGCCAAAAACGAGGAAGTTGTGAACGTGATTGTTGAAGGTGGCGCCGTTCCGGCTTTGATTAAGCATCTTCAACCGCCTCCTTTGCCTGAACACGCCGTTCCCAAGTCGTTTGAGCATGAAGTCGAGAAAGGGAGCGCATTCGCACTTGGACTTCTTGCAGTCAGGCCAGAACATCAACAACTCATTGTTGACAACGGTGCTTTGAAGCATCTCGTTGATCTTTTGAAGAGGCATAACAATGGCTTAACCTCACGTGCCATTAATAGTCTCATTCGGAGGGCTGCAGATGCCATCACTAACCTTGCTCATGAGAACAGCAGTATTAAAACCCGTGTTAGGACGGAAGGTGGGATTCCACCATTAGTTCATTTGCTTGAATTTGCGGATACAAAAGTGCAAAGAGCAGCTGCTGGTGCATTACGGACCCTCGCTTTTAAAAATGATGAAAATAAGAATCAGATTGTTGAATGCAATTCTCTTCCAACTCTGATTCTGATGCTTCGGTCAGAAGACGCTGCTATTCACTATGAAGCGGTTGGTGTGATCGGAAATCTGGTCCACTCCTCCCCCAATATAAAGAAAGAAGTTATTCTCGCTGGAGCCTTGCAACCTGTTATTGGATTACTTAGCTCCTGTTGCTCTGAAAGCCAGAGGGAAGCGGCGTTGTTACTTGGACAGTTTGCAGCGACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTCTGATAGAGATGCTTCAGTCTCCTGATGTTCAACTCAGAGAAATGTCTGCTTTTGCATTGGGGAGATTGGCACAGGACACACATAACCAAGCTGGTATTGCACATACCGGTGGCTTAGTGCCACTACTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGCCCGACTTTATTAGGGTAGGTGGAATTAAGAAACTCCAGGATGGAGAATTCATTATTCAAGCAACTAAGGATTGCATTTCTAAGACATTGAAAAGACTAGAAGAGAAGATCCATGGTCGTGTGTTGAACCATTTATTATATCTTATGCGGGTTTCAGAAAAGGCATTCCAAAGACGAGTTGCTTTGGCTCTTGCCCATCTTTGTTCTGCAGACGACCAGAAAAAAATATTTATTGACCACACTGGACTGGAGTTGCTTATTGGGCTTCTTGGCTCATCATGCCCTAAGCAGCAACTTGATGGTGCCGTGGCTTTATGCAAGTTGGCCAACAAAGCTATGGCTATGTCTCCTATAGATGCTGCTCCTCCATCCCCAACACCTCAGGTCTATTTGGGAGAGAAGTATGTAAACAATGCTACCTTGTCAGATGTTACATTTTTAGTTGAAGGCAAACGGTTTTATGCCCACAGAATCTGTTTACTTGCTTCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGATATTGAGATACCAAATATTAGATGGGAAGTCTTTGAGCTGATGATGAGATTTATATATACCGGATCAGTTGATCTCACTGTTGAAATTGCTCAAGATCTCCTCCGAGCAGCTGATCAATATCTCTTAGAAGGGCTTAAGAGATTATGTGAATACACGATTGCACAGGATGTATCACTGGAGAGCGTGTCAAGTATGTATGAACTTTCGGAAGCCTTCAATGCTATATCATTGCGACACTCATGCATCCTTTTCATCTTGGAGCACTTCGATAAATTAAGTGCAATGCCAGGACACACAGATTTGATTCAGCGTACAATACCAGAGATCCGCAATTATTTTGTTAAAGCTCTTATGAAAGGGAACTCCAACATCCAGGCATAG 2112 0.4446 MELQKHPDHNLPEKKGQKRKLEEDSQHDSQISLPPTGDARDALISDVNQHVSILLSTFSWNESDRASAKRATHALADLAKNEEVVNVIVEGGAVPALIKHLQPPPLPEHAVPKSFEHEVEKGSAFALGLLAVRPEHQQLIVDNGALKHLVDLLKRHNNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRTEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNSLPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVILAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHTGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVPDFIRVGGIKKLQDGEFIIQATKDCISKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCSADDQKKIFIDHTGLELLIGLLGSSCPKQQLDGAVALCKLANKAMAMSPIDAAPPSPTPQVYLGEKYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDLTVEIAQDLLRAADQYLLEGLKRLCEYTIAQDVSLESVSSMYELSEAFNAISLRHSCILFILEHFDKLSAMPGHTDLIQRTIPEIRNYFVKALMKGNSNIQA 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03987 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 194 IPR000225 GO:0005515
Vifa1g03987 703 ProSiteProfiles BTB domain profile. 537 604 IPR000210 GO:0005515
Vifa1g03987 703 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 701 IPR044282 -
Vifa1g03987 703 SMART BTB_4 537 634 IPR000210 GO:0005515
Vifa1g03987 703 SMART arm_5 267 307 IPR000225 GO:0005515
Vifa1g03987 703 SMART arm_5 465 505 IPR000225 GO:0005515
Vifa1g03987 703 SMART arm_5 350 390 IPR000225 GO:0005515
Vifa1g03987 703 SMART arm_5 183 223 IPR000225 GO:0005515
Vifa1g03987 703 SMART arm_5 81 132 IPR000225 GO:0005515
Vifa1g03987 703 SMART arm_5 225 265 IPR000225 GO:0005515
Vifa1g03987 703 SMART arm_5 133 181 IPR000225 GO:0005515
Vifa1g03987 703 SMART arm_5 309 349 IPR000225 GO:0005515
Vifa1g03987 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 194 229 IPR000225 GO:0005515
Vifa1g03987 703 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g03987 703 Pfam Armadillo/beta-catenin-like repeat 190 222 IPR000225 GO:0005515
Vifa1g03987 703 Pfam Armadillo/beta-catenin-like repeat 309 348 IPR000225 GO:0005515
Vifa1g03987 703 Pfam Armadillo/beta-catenin-like repeat 225 264 IPR000225 GO:0005515
Vifa1g03987 703 FunFam Armadillo/beta-catenin repeat family protein 528 672 - -
Vifa1g03987 703 SUPERFAMILY POZ domain 529 631 IPR011333 -
Vifa1g03987 703 CDD BTB_POZ_ARIA_plant 524 639 - -
Vifa1g03987 703 SUPERFAMILY ARM repeat 64 502 IPR016024 -
Vifa1g03987 703 Gene3D - 268 513 IPR011989 -
Vifa1g03987 703 Gene3D Potassium Channel Kv1.1; Chain A 519 666 IPR011333 -
Vifa1g03987 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 145 IPR000225 GO:0005515
Vifa1g03987 703 Gene3D - 32 164 IPR011989 -
Vifa1g03987 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 362 IPR000225 GO:0005515
Vifa1g03987 703 Pfam BTB/POZ domain 530 632 IPR000210 GO:0005515
Vifa1g03987 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 361 403 IPR000225 GO:0005515
Vifa1g03987 703 Gene3D - 165 267 IPR011989 -
Vifa1g03987 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 236 278 IPR000225 GO:0005515
Vifa1g03987 703 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03987 Vifa-Chr1 612813553 612822572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03987 196 414 U-box Gene Family AT3G46510 27.586 2.05e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa1g03987 BTB 1.3e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03987 - - gmx:100819832 1216.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03987 1 612813553 612822572 Vifa1g03987 1 612813553 612822572 ECH
Vifa1g03987 1 612813553 612822572 Vifa3g03174 3 915225257 915242116 PCT