Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03985 ATGGAAAAGAAAAAAGCGACGGTACCTCTTGTTTGTCACGGTCACTCTCGTCCAGTTGTTGATCTCTTTTACAGTCCTGTTACTCCCGATGGTTTCTTCCTTATTAGCGCAAGCAAAGATGCTAGCCCTATGCTCAGGAATGGAGAGACTGGAGATTGGATTGGAACTTTTGAAGGCCACAAAGGTGCTGTTTGGAGTTGCTGTTTGGATGCTAATGCTTTGCGGGCTGCTACTGCTTCTGCTGATTTCTCAACCAAAGTTTGGGACGCATTAACTGGAGACGAGTTACATTCTTTTGAGCATAAGCACATTGTTAGAGCATGTGCTTTTTCTGAGGATACTCACCTTTTGCTCACTGGGGGAGCCGAGAAAATTCTCCGAATTTATGATCTAAATCGACCTGATGCACCACCCAAAGAAGTCGATAAATCCCCTGGTTCAGTCAGGAGTGTTGCATGGCTTCATAGTGACCAGACAATTTTGAGTTCATGCACTGATATGGGAGGTGTCAGGCTATGGGATGTAAGAACTGGTAAGATAGTCCAAACACTTGACACCAAGTCACCTATGACTAGTGCTGAAGTGAGTCAGGATGGTCGTTATATTACAACAGCCGATGGTTCTACTGTCAAGTTTTGGGATGCAAATCACTATGGATTGGTGAAGAGCTATGATATGCCGTGCACTGTGGAATCAGCTTCATTGGAGCCCAAGTTTGGGAACAAGTTTGTTGCTGGGGGAGAAGACTTGTGGGTTCATGTTTTTGATTTCCATACTGGCAATGAGATTGCATGTAACAAAGGCCATCATGGTCCTGTACACTGTGTCCGTTTCTCTCCTGGAGGAGAATCATATGCATCAGGATCTGAGGATGGAACCATCAGAATATGGCAAACAGGCCCATTGACTCCTGGTGAATTAGAGGGTTTATCACCAAATGGATCCTTAGAAAGGGAGAAGGCAAATGCAGAGGAGGATGTTTCTCGCAGAATTGAGGGTTTTCATATTGCAGATGAGAAGTCCAAGGGAAAGGAAGAGGCGGGGGATGAGTTATGA 1056 0.4508 MEKKKATVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDASPMLRNGETGDWIGTFEGHKGAVWSCCLDANALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGAEKILRIYDLNRPDAPPKEVDKSPGSVRSVAWLHSDQTILSSCTDMGGVRLWDVRTGKIVQTLDTKSPMTSAEVSQDGRYITTADGSTVKFWDANHYGLVKSYDMPCTVESASLEPKFGNKFVAGGEDLWVHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTPGELEGLSPNGSLEREKANAEEDVSRRIEGFHIADEKSKGKEEAGDEL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03985 351 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 342 - -
Vifa1g03985 351 MobiDBLite consensus disorder prediction 318 351 - -
Vifa1g03985 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Vifa1g03985 351 Gene3D - 9 306 IPR015943 GO:0005515
Vifa1g03985 351 SUPERFAMILY WD40 repeat-like 5 300 IPR036322 GO:0005515
Vifa1g03985 351 FunFam Serine-threonine kinase receptor-associated protein 8 323 - -
Vifa1g03985 351 SMART WD40_4 92 130 IPR001680 GO:0005515
Vifa1g03985 351 SMART WD40_4 259 298 IPR001680 GO:0005515
Vifa1g03985 351 SMART WD40_4 177 214 IPR001680 GO:0005515
Vifa1g03985 351 SMART WD40_4 134 174 IPR001680 GO:0005515
Vifa1g03985 351 SMART WD40_4 50 89 IPR001680 GO:0005515
Vifa1g03985 351 SMART WD40_4 217 256 IPR001680 GO:0005515
Vifa1g03985 351 SMART WD40_4 5 47 IPR001680 GO:0005515
Vifa1g03985 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
Vifa1g03985 351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Vifa1g03985 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 132 IPR001680 GO:0005515
Vifa1g03985 351 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Vifa1g03985 351 Pfam WD domain, G-beta repeat 265 297 IPR001680 GO:0005515
Vifa1g03985 351 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Vifa1g03985 351 CDD WD40 14 298 - -
Vifa1g03985 351 MobiDBLite consensus disorder prediction 301 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03985 Vifa-Chr1 612218626 612221564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03985 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 29.755 8.50e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03985 K13137 - gmx:100818422 647.506