Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03979 ATGGAAGACAGAAAAGTGAAAATAATTGTTGCTACATCTGTGACTACAGTGATCATTATCATACTCATTGCTCGTTTTGTGTTGGTCTCCAAGGTTTTCTTCCTAATCTGTGGCGCTGGTGTTGCTGTGATCTTTGCAATCTTTGCTTTTGCATTCATGAGCTTAAGCCACAAACGCAGAAGGAGAATATTGGAGTCAGAGTTGAAATCAGAAAGTGGAGAGCTTCGAATGGAGTACAGTTTCTTAAGAAAAGTTGCTGGGGTTCCAACAAAGTTCAGATACAGTGAACTTGAAGAAGCAACAGATGGGTTTCAATCACTTATTGGGAGAGGTTCGTCAGCTTCAGTATTCAAAGGGATTCTCAATGATGGAACTTCAGTTGCTGTGAAAAGAATCGATGCAGAAGAGAGAGGTGAAAGAGAGTTTAAATCAGAAGTTGCAGCAATAGCTAGTGTTCATCATGTGAATCTTGTGAGACTTTTTGGGTATTGTAATTCTTCTTCAGCTCCTAGGTACCTTGTTTATGATTTTATCTCAAATGGTTCATTGGATTGTTGGATTTTTCCCAAAAGGGATGATTCTCAAAGGCGTTCGCGTCGCAGTGGATGTTTGTCGTGGAACTTGAGGTATAAAGTTGCAATTGATGTTGCTAAAGGACTTGCATATCTTCACCATGATTGTAGATCAAGGATCTTACACCTTGATATAAAGCCAGAAAATATACTATTGGATGAGAGTTTTAGAGCACTTGTTTCCGATTTTGGTCTATCAAAACTTACTAATAAAGATGAAAGCCAAGCGGCGATGTCAACAATAAGAGGAACAAGAGGTTACATGGCACCTGAATGGGTTTTAGAAAAAGGTATTTCAGATAAAACAGACGTATATAGTTATGGAATGGTTATACTAGAGATTGTTGGAGGAAGAAAAAATGTTAGTTTAGTTGAAGATGAAAAGGACAAGTCAAAAAGGAAATGGCAATATTTTCCAAAGATTGTAAATGAGAAAGTGAAACAAGGGAAAATAATGGAAATTGTTGATGATAGGTTAATGGAATATGATGAGAATGAGGTGATAAAATTGGTGCATATTGCTTTATGGTGTGTTCAAGAGAAGCCAAGGTTGAGACCTAGTATGGCTAAAGTGGTAGATATGCTTCAAGGCAGTGTGATGGTGGATGAACCACCTGCTTCAAAAATGATTCTTGTTGATTTTCTATCTGATGATCATGATGATAATGTTAACATGCCAAAGAAGGACTCTATTATGTCTATACAAAGCAATGTGGAATCTAATTCTACCTACTCATTTGCTACTACTGTTTTTTCTGGAAGATAG 1338 0.3714 MEDRKVKIIVATSVTTVIIIILIARFVLVSKVFFLICGAGVAVIFAIFAFAFMSLSHKRRRRILESELKSESGELRMEYSFLRKVAGVPTKFRYSELEEATDGFQSLIGRGSSASVFKGILNDGTSVAVKRIDAEERGEREFKSEVAAIASVHHVNLVRLFGYCNSSSAPRYLVYDFISNGSLDCWIFPKRDDSQRRSRRSGCLSWNLRYKVAIDVAKGLAYLHHDCRSRILHLDIKPENILLDESFRALVSDFGLSKLTNKDESQAAMSTIRGTRGYMAPEWVLEKGISDKTDVYSYGMVILEIVGGRKNVSLVEDEKDKSKRKWQYFPKIVNEKVKQGKIMEIVDDRLMEYDENEVIKLVHIALWCVQEKPRLRPSMAKVVDMLQGSVMVDEPPASKMILVDFLSDDHDDNVNMPKKDSIMSIQSNVESNSTYSFATTVFSGR 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03979 445 ProSiteProfiles Protein kinase domain profile. 102 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03979 445 SMART serkin_6 102 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03979 445 ProSitePatterns Protein kinases ATP-binding region signature. 108 130 IPR017441 GO:0005524
Vifa1g03979 445 FunFam Putative receptor-like protein kinase 69 177 - -
Vifa1g03979 445 Gene3D Phosphorylase Kinase; domain 1 66 177 - -
Vifa1g03979 445 Pfam Protein kinase domain 106 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03979 445 FunFam Putative receptor-like protein kinase 178 394 - -
Vifa1g03979 445 Gene3D Transferase(Phosphotransferase) domain 1 178 397 - -
Vifa1g03979 445 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 32 396 - -
Vifa1g03979 445 SUPERFAMILY Protein kinase-like (PK-like) 83 386 IPR011009 -
Vifa1g03979 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03979 Vifa-Chr1 611712686 611714023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03979 1 398 Receptor kinase-like Gene Family AT5G20050 60.644 1.16e-165 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa1g03979 Pkinase 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03979 - - gmx:100791152 608.216