Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03972 ATGGAAGAAAGAGAGATTTTTGGTTCTGGGCATGGTGTTAATGTTAATCAGGTCCCACAGGGGTTCAACTTGGGTCAAAATCAAAATTCGTTGAGTTTTTCTGGGCCCACTGGGGAGGTTCCGGCGACTGTTCCGGTGATTGCACCGGGTGGCGGTGGTATGGATATGAAGAAGAAGAGGGGTAGGCCTAGGAAGACTGAATCTGGAAGTAAACCGGCGCTGTCTCCGATGCCGATTTCGGCGTCGATTCCGTTGACTGGAGATTTCTCTGGCTGGAAAAGTGGTGGAGGGAAGCCTTTTGAAGCAATCAAGAAGCCTTTGAAGTTAAATGATTTTGATGAAGATGATAGAACAGCTCCACCCAGTTCCAGTTTCAAAACTCATGTGCTTACAGTAAATTCTGGAGAGGATCTCTCGATGAAAATAATGTCTCTCTCTCAACAAGAGAATCATACTATATCCATTCTCACTGCAACTGGCACAATTTCAAATGTCACACTTCGCCAGTCAGATGCCTGTGGAGGTACTTCGACATATGAGGGAGTTTTCGAGATTCTTTCCTTGAGCGGATCATTTGTGCCAACCGAGAACGGATTGACAAAGAGCAGAGCTGGACGAATGAGTGTCTCTTTGGCAGGTCCAAACGGCCGTGTTTTCGGAGGCGCGCTCGCTGGTTTGCTGGTAGCTGCTGGTTCTGTGCAGGTTGTGGTTGCAAGTTTTCTTCCTGATAATCAGAAACCAAAGAAGCAAAGGATCGATCATATGTCACCAACCGCCCCTCCCACATCAACTCATATTAACAATCATGCATCTGAAGAATTGAAAACCGATCTCGGTGGAATGAAGCCTATCATGTCACCAGCCGGATTTAACTTCGCTTCATTCGGCAACGGCCAGGGCTCTAATGGCCAGGGCTCTGGCAACTCATCATCATCAGGCGATGATGACGAGCATGTCCAACCCTAG 966 0.4762 MEEREIFGSGHGVNVNQVPQGFNLGQNQNSLSFSGPTGEVPATVPVIAPGGGGMDMKKKRGRPRKTESGSKPALSPMPISASIPLTGDFSGWKSGGGKPFEAIKKPLKLNDFDEDDRTAPPSSSFKTHVLTVNSGEDLSMKIMSLSQQENHTISILTATGTISNVTLRQSDACGGTSTYEGVFEILSLSGSFVPTENGLTKSRAGRMSVSLAGPNGRVFGGALAGLLVAAGSVQVVVASFLPDNQKPKKQRIDHMSPTAPPTSTHINNHASEELKTDLGGMKPIMSPAGFNFASFGNGQGSNGQGSGNSSSSGDDDEHVQP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03972 321 Pfam Plants and Prokaryotes Conserved (PCC) domain 126 240 IPR005175 -
Vifa1g03972 321 MobiDBLite consensus disorder prediction 290 321 - -
Vifa1g03972 321 Gene3D - 126 255 - -
Vifa1g03972 321 MobiDBLite consensus disorder prediction 1 80 - -
Vifa1g03972 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 35 302 IPR039605 GO:0003680
Vifa1g03972 321 MobiDBLite consensus disorder prediction 292 321 - -
Vifa1g03972 321 MobiDBLite consensus disorder prediction 13 37 - -
Vifa1g03972 321 MobiDBLite consensus disorder prediction 246 268 - -
Vifa1g03972 321 CDD DUF296 126 240 IPR005175 -
Vifa1g03972 321 ProSiteProfiles PPC domain profile profile. 122 262 IPR005175 -
Vifa1g03972 321 SUPERFAMILY AF0104/ALDC/Ptd012-like 123 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03972 Vifa-Chr1 610943448 610946139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03972 57 251 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 54.460 2.77e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03972 - - mtr:11422923 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03972 1 610943448 610946139 Vifa3g01657 3 428297436 428300368 ECH
Vifa1g03972 1 610943448 610946139 Vifa1g03972 1 610943448 610946139 ECH
Vifa1g03972 1 610943448 610946139 Vifa3g01657 3 428297436 428300368 PCT