Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03945 ATGCCAGATTTGGGGAACCGTCCTCTCCCGCTCGTGCCCTGCTCCCCCGTCAAGGCCGTCGACGATTCAGCTGCGCTCGAAGCACTACCCAGTGATTTTGGTTCCGATAATGGCGTCCATGCTCGGGTTTTGAAGAGGACTCGCGGTTCTCTCCGGAAGACTGGCAATGCTAAGAGTTTGTGGGATCGCCTTACGGATCCTCAATCTCTCCCGTTTCTCGTCGCTGCTCCAAAGATGGTTGAATGCTGTTTCTGCCACCATTCTGTGTGTCCCGGGGAGGAGCTGATATGTTCTGTTCATGGATGTGGCTCATGCTATCATAAGGAATGTGCAAAACAAGTCAGTGGGGTTTCAAATCTGAAAAAGAACAAGTTCAAGTGTCCACAACATGTGTGCTTCATTTGCAAGCAAAAGATGCATTTGCGGTGTGTGCGTTGCACGACGGCTTTCCATAGTAAATGTGCACCATGGCCTGAAGCTGTGATCCCTCTGAAAGATCATCCTGGACAAGCTGTTTGTTGGAGACATCCTTCTGATTGGCGCCTGGATAGAAAGGAGCAGCCTGATACTCCAACAAGTGACATTTCGGAAGTATTTTGTCGTTTGCCTCTTCCTTTTGTTAACGAGGAATTCAAAATCGACTTCACTTGGAAAGACATGGACAATAAGATGGAGCCACCGCCATATATACACATAAGACGCAATATATACCTAGTGAAGAAAAAGCGTAGTGATATAGATGATGGTGCTGGGTGCACCAACTGCATTTCTTCGTGCTCTGATGATTGTGTATGCAGGGTTCAATGCATAAGCTGCTCAAAGGCTTGTCGGTGCTCTGAAAATTGTAATAATCGGCCATTTCGCAAGGAGAAAAAAATCAGGATTGTCAAGACTGAGTTTTGTGGATGGGGAGTTGAGGCTGCTGAAACAATTGAGAAAGGAGGGTTCATAGTTGAGTATATTGGAGAAGTCATTGATGATGCTTCATGTGAACAAAGGCTTTGGGACATGAAATATAAGGGTGTGCAGAATTTTTACATGTGTGAGATTCGTAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATTCATCACGTTTTTTAAACCATAGCTGTGATCCCAATTGTGTTTTGGAGAAGTGGCAAGTAGATGGTGAAACTCGCGTTGGTGTATTTGCTGCTCGTTCGATAGAAGTTGGAGAGCCATTAACATATGATTATAGATTTGTGCAATTTGGTCCAGAGGTGAAGTGCCACTGCGGTGCCCAGAAATGTCAAGGATTTCTAGGCTCAAAAAAGAAAATTAGCAAAGTAAACCTGTGTTGGGGGGCAAAACGTAAGCGAACTTTATGCACATCGGCAGTAAAAGTTGCTGATTTGCCAAAACATTATATGTAG 1398 0.4464 MPDLGNRPLPLVPCSPVKAVDDSAALEALPSDFGSDNGVHARVLKRTRGSLRKTGNAKSLWDRLTDPQSLPFLVAAPKMVECCFCHHSVCPGEELICSVHGCGSCYHKECAKQVSGVSNLKKNKFKCPQHVCFICKQKMHLRCVRCTTAFHSKCAPWPEAVIPLKDHPGQAVCWRHPSDWRLDRKEQPDTPTSDISEVFCRLPLPFVNEEFKIDFTWKDMDNKMEPPPYIHIRRNIYLVKKKRSDIDDGAGCTNCISSCSDDCVCRVQCISCSKACRCSENCNNRPFRKEKKIRIVKTEFCGWGVEAAETIEKGGFIVEYIGEVIDDASCEQRLWDMKYKGVQNFYMCEIRKDFTIDATFKGNSSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCHCGAQKCQGFLGSKKKISKVNLCWGAKRKRTLCTSAVKVADLPKHYM 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03945 465 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 461 IPR025787 -
Vifa1g03945 465 ProSiteProfiles SET domain profile. 291 408 IPR001214 GO:0005515
Vifa1g03945 465 Pfam SET domain 302 407 IPR001214 GO:0005515
Vifa1g03945 465 ProSiteProfiles Post-SET domain profile. 414 430 IPR003616 -
Vifa1g03945 465 CDD SET_ASHR3-like 292 430 - -
Vifa1g03945 465 FunFam Histone-lysine N-methyltransferase 206 441 - -
Vifa1g03945 465 ProSiteProfiles AWS domain profile. 248 291 IPR006560 GO:0005634|GO:0042054
Vifa1g03945 465 SMART set_7 291 414 IPR001214 GO:0005515
Vifa1g03945 465 SUPERFAMILY SET domain 209 420 IPR046341 -
Vifa1g03945 465 CDD PHD2_NSD 81 130 - -
Vifa1g03945 465 PANTHER SET DOMAIN PROTEINS 59 451 - -
Vifa1g03945 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 179 IPR013083 -
Vifa1g03945 465 Gene3D SET domain 207 449 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03945 Vifa-Chr1 605153259 605174215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03945 272 429 C2H2 Transcription Factor Family AT2G23740 35.196 2.84e-23 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g03945 SET 1.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03945 - - tpra:123884811 800.431