Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03941 ATGGCCAAACTGTCTCAACAACTAGCTCACAAAAACAATGCAACAAATAACAATAACCTTAATGCAACTAACACCAAAGTGAAAAGAACAAGGAGAAGTGTCCCAAGAGATTCTCCCATTCAACGCAGCTCAATATATAGAGGAGTCACTAGGCACAGATGGACAGGGCGATACGAAGCTCATTTGTGGGACAAGAATAGTTGGAATGAATCGCAAAACAAGAAAGGACGACAAGTCTACCTCGGTGCTTATGATGATGAAGAGGCTGCTGCACATGCTTATGATCTAGCTGCATTGAAATATTGGGGTCCAGATACCATTCTTAACTTTCCGTTGTGTAGTTACGAGAATCAGTTAAGAGAAATGGAGGATCAATCAAGAGAGGAGTATATTGGATCATTACGGAGGAAAAGCAGTGGTTTTTCTCGCGGAGTTTCTAAATATAGGGGTGTGGCAAGACACCATCATAATGGAAGGTGGGAGGCTCGTATTGGGAGGGTTTTTGGCAACAAATATCTTTATCTTGGAACATATGCTACCCAAGAAGAAGCAGCCACAGCATACGATATGGCAGCTATTGAATATCGTGGACTCAATGCTGTCACCAATTTTGACCTCAGCCGTTATATTAAGTGGCTTAAGCCTAATCACAATGATAACAACAACAAACTTATTCAGAATTCTAGTAATACAATCTCTGATACCAAATTTATCCCAAACATGATGATCGATCAAAATGAGCCATTTGGAGGAGAACAAGAACTAGTACAACCTCGGCCACCTAGAACCACCTCAGCATTAGGTCTTTTGCTTCAATCATCAAAGTTTAAGGAGATGATGGAAATGACAAATGCTGCTGATACTTTTCAGACATACTTTGATGAGGATGATTTATTCAATGTGCCCTCATGA 912 0.4046 MAKLSQQLAHKNNATNNNNLNATNTKVKRTRRSVPRDSPIQRSSIYRGVTRHRWTGRYEAHLWDKNSWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGPDTILNFPLCSYENQLREMEDQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNHNDNNNKLIQNSSNTISDTKFIPNMMIDQNEPFGGEQELVQPRPPRTTSALGLLLQSSKFKEMMEMTNAADTFQTYFDEDDLFNVPS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03941 303 FunFam AP2-like ethylene-responsive transcription factor 44 113 - -
Vifa1g03941 303 Pfam AP2 domain 45 103 IPR001471 GO:0003700|GO:0006355
Vifa1g03941 303 Pfam AP2 domain 146 197 IPR001471 GO:0003700|GO:0006355
Vifa1g03941 303 FunFam AP2-like ethylene-responsive transcription factor 146 207 - -
Vifa1g03941 303 SUPERFAMILY DNA-binding domain 44 112 IPR016177 GO:0003677
Vifa1g03941 303 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Vifa1g03941 303 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Vifa1g03941 303 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Vifa1g03941 303 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vifa1g03941 303 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Vifa1g03941 303 MobiDBLite consensus disorder prediction 1 38 - -
Vifa1g03941 303 Gene3D AP2/ERF domain 45 113 IPR036955 GO:0003700|GO:0006355
Vifa1g03941 303 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Vifa1g03941 303 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 226 - -
Vifa1g03941 303 ProSiteProfiles AP2/ERF domain profile. 45 111 IPR001471 GO:0003700|GO:0006355
Vifa1g03941 303 SMART rav1_2 45 117 IPR001471 GO:0003700|GO:0006355
Vifa1g03941 303 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Vifa1g03941 303 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03941 Vifa-Chr1 605108565 605110044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03941 41 209 AP2-EREBP Transcription Factor Family AT5G57390 72.781 8.69e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa1g03941 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03941 K09285 - gmx:100795869 426.402