Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03939 ATGTTGATAAGTGTAACAGAAGCGTCCCCTTCTCTCCGCTGTTGGTCGCTCAGTAACCGTCGCATACCAACAAAACCCAATCTTTCTCCTCGTCTCCTCCGTTCAACTTCCCGTCAACACAATCTCTCTCTCCGTCTCCGTTCATCATCATCCTCCAATCTCTCTACCAGCTGTGACCTAGCGAACTTCGATCCTTTAGGCATTAATCCAGATTTATCTTCTACTTGGAAAAATCTCGTCACCGTCTTTCAAACCTCTTCGGAAAAGGATAAACCTCGAGGCGTAGCGGCTGCAATTGAAGATAGTTCAATTGATTTTGGGGACTTCTTCAATGGTCCACTGCCTGGTATTGGTAGACTTGGTATATGCTCTCTTGGCATTGTTCCATTCATCAATGCGCAGATTGTTTTTCAGCTTCTTGCTCAAGTGTATCCCAAATTGCAAGATCTTCAAAAGAAAGAAGGTGAGGCTGGAAGAAAGAAAATTCTTCAGTACACTCGATATGCTTCCGTTGGATTTGCTATTGTACAGGCTATCGGGCAAGTTCTTTTCCTACGTCCCTATGCAAATGATTTTACAACAGAATGGGCCATTACTTCTGTTATCTTACTCACACTTGGCTCTGTCTTTACCACGTACATCGGGGAGCAAATTACCGAGCTCAAACTTGGGAATGGTACCTCTCTTTTGATATTCACGAACATTATCTCCTATTTGCCGGCTTCTTTTGGTCGCACGTTTTCACAGGCGTTTAGTGATGCTAACTATGTTGGACTTGTTACCATCATTCTCTCCTTCTTTCTGTTGGTACTTGGTATTGTCTATGTTCAGGAAGCAGAGAGAAAAATTCCTATTAATTATGCTTCTAGATTCACCAGCAGAAGCGGTGGACTTGAGAAATCTGCTTACCTTCCGTTTAAGGTAAATAGTTCTGGAGTAATGCCTATCATTTTTTCTACGTCGTCATTAGCTCTTCCTGGTACTTTAGCTCGCTTCACTGGTTTAAGCTCACTAAAAACTGCTGCAGTGGCTTTGAATCCTGGAGGTTCCTTCTATCTTCCATTTAACATACTTTTGATAGCCTTCTTCAACTACTATTATACTTTCCTACAACTGGATCCTGATGATGTGAGCGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAAAAGTACAGCTACATTTATTAAAACTGTTCTTAGTCGAATATCAGTCCTGGGCTCAACATTTTTGGCAATCTGGGCTTGCTGGACCTGCAACACAGCAAGAAAAGTTCGAGCTGAGATTATATCCCAGAAGTACAAAAACATAGAGTTATATGATTTTGATAAGTATTGA 1353 0.4176 MLISVTEASPSLRCWSLSNRRIPTKPNLSPRLLRSTSRQHNLSLRLRSSSSSNLSTSCDLANFDPLGINPDLSSTWKNLVTVFQTSSEKDKPRGVAAAIEDSSIDFGDFFNGPLPGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKKILQYTRYASVGFAIVQAIGQVLFLRPYANDFTTEWAITSVILLTLGSVFTTYIGEQITELKLGNGTSLLIFTNIISYLPASFGRTFSQAFSDANYVGLVTIILSFFLLVLGIVYVQEAERKIPINYASRFTSRSGGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLSSLKTAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTATFIKTVLSRISVLGSTFLAIWACWTCNTARKVRAEIISQKYKNIELYDFDKY 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03939 450 Hamap Protein translocase subunit SecY [secY]. 106 443 IPR026593 -
Vifa1g03939 450 ProSitePatterns Protein secY signature 1. 121 140 IPR030659 -
Vifa1g03939 450 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 119 417 IPR002208 GO:0015031|GO:0016020
Vifa1g03939 450 Pfam SecY 122 421 IPR002208 GO:0015031|GO:0016020
Vifa1g03939 450 PRINTS Preprotein translocase SecY subunit signature 405 423 - -
Vifa1g03939 450 PRINTS Preprotein translocase SecY subunit signature 162 185 - -
Vifa1g03939 450 PRINTS Preprotein translocase SecY subunit signature 120 140 - -
Vifa1g03939 450 PRINTS Preprotein translocase SecY subunit signature 311 330 - -
Vifa1g03939 450 PRINTS Preprotein translocase SecY subunit signature 350 372 - -
Vifa1g03939 450 PRINTS Preprotein translocase SecY subunit signature 194 219 - -
Vifa1g03939 450 PRINTS Preprotein translocase SecY subunit signature 220 243 - -
Vifa1g03939 450 ProSitePatterns Protein secY signature 2. 213 230 IPR030659 -
Vifa1g03939 450 SUPERFAMILY Preprotein translocase SecY subunit 106 421 IPR023201 -
Vifa1g03939 450 Gene3D SecY subunit domain 91 429 IPR023201 -
Vifa1g03939 450 NCBIfam preprotein translocase subunit SecY 116 420 IPR002208 GO:0015031|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03939 27 450 Chloroplast and Mitochondria Gene Families AT2G18710 65.049 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03939 K10956 - gmx:100810430 643.654