Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03936 ATGGAATTGAAAAAGGGCAAGCTTGTCAGGTTTTACTCGGATGGGAAAAAGCATAAAGAACCTTCGGTGCTTGAAACCCCGTCTTCCATATACAAGCTTTCATCATCTACCTTGCTTAAATCTAGTAACAATGTCCTTCCATTAGGTAAAAACAAAATAGGAGGATCTAAGGTATTCCCTGAGGACCATGAGCCCTGGAGAAAAAGAATACTTGACCCGGGTAGCGAGATTGTCTTGAAATGGAATCGGGTCTTTATAGTTTCTTGCTTGGTGGCACTTTTTCTTGATCCTCTCTACTTTTATTTGCCTAGTGTTATACAAAATACAGGGTCTTCCTGTGTCAGGACTGATCTAACGTTACGGATTGTTGTCACTTTTCTTCGTACCATTGCGGATGCTTTTTATCTCTTGCATATTATGATTAAGTTCAGGACAGCATATGTGGCACCCAGCTCACGGGTTTTTGGAAGGGGTGAACTTGTCATGGACCCAACTAAAATTGCTAGGAGATACATCAGATCTGACTTCTTCATTGATTTTATTGCCACACTGCCACTACCACAGATGGTCATCTGGTTTATCATACCAGCTACAAGGACCCCTCAGACGGATCACAAGAATAATGCTCTTGCATTGATTGTCTTGCTCCAATATGTTCCAAGATTATATTTGATTTTTCCATTAAGTTCTCAAATAATCAAAGCAACAGGAGTGGTTACAAAGACTGCTTGGGCAGGAGCTGCATATAATCTGCTATTGTACATGTTGGCTAGCCATGTTTTAGGGGCATCCTGGTATCTTCTGTCTGTTGACCGATATACTACTTGTTGGAAATCTTTATGCAAAAAGGAAGATAACCCTTATAATTGCTTTCTCTACCTAGACTGCACTTCTTTGAACAATGGTATGCGCAAGATATGGGCAAATAGTACAGATGTGTTTAGTAGCTGTGACCCCAGCAATGACATTCAGTTCAAGTATGGATTATTCCAAAATGCATTAACAAAGCACGTTGTCTCTTCAAACTTCATATCAAAATACTTGTATTGTTTATGGTGGGGGTTGCAGCAATTAAGTTCTTATGGACAAAATCTAGACACAAGCACATTTATCGGAGAGACGTCATTTGCTATTGTGATTGCCATCTTAGGTCTTGTATTATTTGCACATTTGATTGGGAACATGCAGACATATTTACAATCAATTACTATAAGGCTGGAGGAGTGGAGGCTAAAACGAAGAGACACAGAGGAGTGGATGGGACATCGCCAACTCCCTGAAGATTTGAGATTTCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCAACCCGTGGTGTTGATGAAGAAACCATTCTACGTTCGTTGCCAACCGATCTTCGTCGTGACATCCAACGCCACCTATGCTTAGACCTAGTTAGACGAGTTCCCTTCTTCTCACAAATGGATGATCAGCTTCTTGATGCCATATGTGAGCGGCTGAGGCAGATTAGATAG 1497 0.4075 MELKKGKLVRFYSDGKKHKEPSVLETPSSIYKLSSSTLLKSSNNVLPLGKNKIGGSKVFPEDHEPWRKRILDPGSEIVLKWNRVFIVSCLVALFLDPLYFYLPSVIQNTGSSCVRTDLTLRIVVTFLRTIADAFYLLHIMIKFRTAYVAPSSRVFGRGELVMDPTKIARRYIRSDFFIDFIATLPLPQMVIWFIIPATRTPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSVDRYTTCWKSLCKKEDNPYNCFLYLDCTSLNNGMRKIWANSTDVFSSCDPSNDIQFKYGLFQNALTKHVVSSNFISKYLYCLWWGLQQLSSYGQNLDTSTFIGETSFAIVIAILGLVLFAHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMGHRQLPEDLRFRVRRFVQYKWLATRGVDEETILRSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLRQIR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03936 498 Gene3D Helix hairpin bin 406 469 - -
Vifa1g03936 498 SUPERFAMILY Voltage-gated potassium channels 75 400 - -
Vifa1g03936 498 FunFam Cyclic nucleotide-gated ion channel 1 405 469 - -
Vifa1g03936 498 PRINTS EAG/ELK/ERG potassium channel family signature 139 148 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g03936 498 PRINTS EAG/ELK/ERG potassium channel family signature 391 400 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g03936 498 PRINTS EAG/ELK/ERG potassium channel family signature 256 266 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g03936 498 PRINTS EAG/ELK/ERG potassium channel family signature 347 364 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g03936 498 PRINTS EAG/ELK/ERG potassium channel family signature 373 384 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g03936 498 PRINTS EAG/ELK/ERG potassium channel family signature 441 448 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa1g03936 498 SUPERFAMILY cAMP-binding domain-like 408 497 IPR018490 -
Vifa1g03936 498 Gene3D - 84 403 - -
Vifa1g03936 498 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 62 496 - -
Vifa1g03936 498 Pfam Ion transport protein 81 404 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03936 Vifa-Chr1 604383055 604388510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03936 1 494 Ion Channels AT4G30360 69.339 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03936 K05391 - gmx:100808425 877.47