Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03935 ATGTCACACTTCACAAGTAGCAGCATCTCAATGCTTTTAACTAGTAGAACAAGATGTAACTCAAAAACACTAAAAAAGTACAACCAATCCAACGTTTCAAGCCCAAAAGGTGTATGTGGAAATGCTGAGCTGAAAGCACTTATGGATTTGAAACACAGTTTGGATCCAGAAGGACATTTTCTCTCTTCATGGTCAACAAATGGTAACCCTTGTGATGAATCTTTTGAAGGTGTTGCTTGCAATGAAAAAGGCCAAGTAGCAAATGTTTCATTGCAAGGAAAAGGGCTTTCTGGTAAACTATCACCAGCCATTGGTGATCTTAAGCACTTGACAGGACTTTACTTGCATTACAACTCTTTGTATGGTGAGATACCTAGAGAAATTGCTAACTTGACTGAGCTTAGTGATTTGTACTTGAATGTGAATCATTTGTCTGGTGAAATCCCATCTGAGTTTGGCAAAATGGAGAGCCTACAAGTTTTGCAGCTTTGTTATAACCAGTTAACAGGAAGCATACCGACTCAGCTCGGAGATTTGAAGAAGCTTAGTGTTCTTGCTCTACAGTCGAACAAATTAGCCGGAGCTATCCCTGCTAGTTTAGGTGACTTAAGAATGTTGATGAGGCTAGATTTGAGCTCTAATAGTCTTTTTGGTTCGATTCCAACAAGACTTGCTGATGCTCCTTTTCTTCAAGTTCTTGATGTTCACAACAATACTCTTTCTGGAAATGTACCTCCTGCTTTGAAGAGACTTGATGATAAATTTGTGTATGAATACAATTTGGGACTATGTGGAGATGGATTTTCATCTTTGAAAGCTTGCAATGCCTCTGATCACGCCAATCCAAGCAGGCCTGAACCTTATGGAGCAGGAGTTGATGTTAAGCCTAAAGAAATCCCAGAAACTGCAAATATTAAGTTGCCTTGCAACACAACTCGGTGTCAAAACTCGTCAAAATCCAAAAAAACAGTGTCTATTACCGTCGGCTTAGTTCTGGCGACAATTGCAGTTTCAGCAATCGGCATTCTAGCTTTCACAATGTATCGTAGGCGGAAGCAAAAGCTTGGTAGTGCCTTTGATATCACCGAAAGCCGTCTAAGTACTGATCAAACCAGAAGTATTTATCGGAAAAATGGATCTCCTTTGGTTAGTCTTGAATATGCCAATGGATGGGATCCTTTGGCAGATAGTAGACATTTCAATGGAGATAAGCAAGATATGTTCTCGAGTTTCCGGTTCAACTTGGAGGAAGTGGAATCCGCGACTCAGTATTTCTCAGAGCTGAATCTGTTGGGTAAGAGTAACTTTAGTGCAACATATAAAGGAGTCCTAAGAGATGGATCTATTGTTGCTGTTAAGAGCATTAGTAAAACTAGTTGCAAATCAGATGAATCTGAGTTTTTGAAGGGGTTGAACATTTTGACGTTGTTAAGGAATGATAATTTGGTGAGGTTGAGAGGATTTTGTTGTTCGAGAGGACGAGGAGAATGCTTCCTGGTTTATGATTTTGTTTCAAATGGAAATTTGTCGCGATACCTTGATGTTAAGGAAGGTGAAGGTGAAGTCCTTGAATGGTCAACTAGAGTTTCGATTGTAAAAGGAATCGCCAAAGGCATATCATATCTGCATGCATACAAAGCAAACAAACCAGCTCTTGTTCACCAAAACATCTCAGCCGAGAAAGTGCTCATCGATCAGCGACAGAATCCAATACTCTCCGATTCTGGTCTATATAAGCTTCTCACCAACGACATTGTCTTTTCTTCACTTAAGGGTAGTGCTGCAAAAGGTTACTTAGCTCCAGAATACACCACCACGGGCCGGTTCACTGAAAAAAGCGATGTCTACGCATTTGGGATCCTTCTTTTCCAGGTACTCACAGGGAAGCATAAGATCACTAGCTCAATGCGCCTTGCTGCAGAATCCTTCAAATACCAAGAATTCATCGACCAGAATCTCCACGGAAGATTCTTCGAATACGAGGCGGCTAAACTAGCAAGAATGGCATTGCTTTGCTCCCATGACTCTCCCTTTGAGAGGCCAACTATGGAAGCTATTGTTCAAGAACTTGCCAATTGTAGTAGTTGTCTTTGA 2094 0.4083 MSHFTSSSISMLLTSRTRCNSKTLKKYNQSNVSSPKGVCGNAELKALMDLKHSLDPEGHFLSSWSTNGNPCDESFEGVACNEKGQVANVSLQGKGLSGKLSPAIGDLKHLTGLYLHYNSLYGEIPREIANLTELSDLYLNVNHLSGEIPSEFGKMESLQVLQLCYNQLTGSIPTQLGDLKKLSVLALQSNKLAGAIPASLGDLRMLMRLDLSSNSLFGSIPTRLADAPFLQVLDVHNNTLSGNVPPALKRLDDKFVYEYNLGLCGDGFSSLKACNASDHANPSRPEPYGAGVDVKPKEIPETANIKLPCNTTRCQNSSKSKKTVSITVGLVLATIAVSAIGILAFTMYRRRKQKLGSAFDITESRLSTDQTRSIYRKNGSPLVSLEYANGWDPLADSRHFNGDKQDMFSSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSIVAVKSISKTSCKSDESEFLKGLNILTLLRNDNLVRLRGFCCSRGRGECFLVYDFVSNGNLSRYLDVKEGEGEVLEWSTRVSIVKGIAKGISYLHAYKANKPALVHQNISAEKVLIDQRQNPILSDSGLYKLLTNDIVFSSLKGSAAKGYLAPEYTTTGRFTEKSDVYAFGILLFQVLTGKHKITSSMRLAAESFKYQEFIDQNLHGRFFEYEAAKLARMALLCSHDSPFERPTMEAIVQELANCSSCL 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03935 697 Gene3D Phosphorylase Kinase; domain 1 396 503 - -
Vifa1g03935 697 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 81 692 - -
Vifa1g03935 697 Pfam Protein tyrosine and serine/threonine kinase 429 690 IPR001245 GO:0004672|GO:0006468
Vifa1g03935 697 ProSiteProfiles Protein kinase domain profile. 425 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03935 697 FunFam Leucine-rich repeat receptor-like kinase 42 151 - -
Vifa1g03935 697 SUPERFAMILY L domain-like 38 249 - -
Vifa1g03935 697 FunFam Protein NSP-INTERACTING KINASE 2 396 503 - -
Vifa1g03935 697 Gene3D Ribonuclease Inhibitor 154 266 IPR032675 -
Vifa1g03935 697 FunFam Protein NSP-INTERACTING KINASE 2 153 275 - -
Vifa1g03935 697 Pfam Leucine rich repeat N-terminal domain 41 81 IPR013210 -
Vifa1g03935 697 Gene3D Transferase(Phosphotransferase) domain 1 504 696 - -
Vifa1g03935 697 Gene3D Ribonuclease Inhibitor 42 152 IPR032675 -
Vifa1g03935 697 SUPERFAMILY Protein kinase-like (PK-like) 405 690 IPR011009 -
Vifa1g03935 697 FunFam Protein NSP-INTERACTING KINASE 2 504 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03935 Vifa-Chr1 604100188 604103955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03935 32 538 Miscellaneous Gene Families AT4G22730 56.564 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vifa1g03935 PK_Tyr_Ser-Thr 2.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03935 - - gmx:100789253 1146.34