Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03931 ATGGCTTCCATTGCTGCTTCAACTGCAGCTGCTTCACTTGGAATGTCAGAAATGCTTGGAAGTCAAATTAAATTCAGTGGTGCAACAAGGTCTGCTTCAACTTCCTCAAGTGTTTCTAGTTTTAAGACTGTTGCTCTTTTCTCGAAGAAGAAGGCAGCTCCGGCGAAGCAGAAGGTGGTTGCGCCGGCCAACGAGGAACTCGCCAAGTGGTATGGTCCTGACAGAAGGATCTTCTTGCCTGACGGTCTCTTGGACAGGTCGGAGATTCCCGAGTACTTGACCGGAGAAGTCCCCGGAGACTATGGTTATGATCCTTTTGGTCTAAGCAAGAAGCCTGAAGACTTTGCCAAATATCAGGGATATGAATTGATTCATGCAAGATGGGCAATGCTTGGTGCTGCCGGATTTATCATTCCCGAGGCATTCAACAAATATGGAGCCAACTGTGGTCCCGAGGCTGTTTGGTTCAAGACCGGAGCACTTCTTCTTGACGGAGGCACGTTGAACTACTTCGGTAAACCAATCCCCATCAACCTTATTCTCGCAGTTGTTGCCGAGGTTGTTCTCTTGGGAGGTGCTGAGTACTACAGAATCACCAATGGACTGGACTTGGAAGACAAGCTTCATCCAGGTGGTCCATTCGACCCATTAGGTCTAGCAAACGATCCCGACCAAGCTGCAATCCTAAAAGTGAAGGAGATTAAGAATGGCAGACTCGCTATGTTTGCCATGCTTGGTTTCTTCATTCAAGCCTATGTCACAGGAGAAGGACCAGTTGAGAATTTCGCGAAACATCTCAGTGACCCTTTTGGCAACAATTTGCTCACTGTCATTGCTGGAAATGTTGAGAGGGCTCCAACTCTGTGA 867 0.4787 MASIAASTAAASLGMSEMLGSQIKFSGATRSASTSSSVSSFKTVALFSKKKAAPAKQKVVAPANEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQGYELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLILAVVAEVVLLGGAEYYRITNGLDLEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENFAKHLSDPFGNNLLTVIAGNVERAPTL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03931 288 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 31 278 IPR001344 GO:0009765|GO:0016020
Vifa1g03931 288 FunFam Chlorophyll a-b binding protein, chloroplastic 77 288 - -
Vifa1g03931 288 SUPERFAMILY Chlorophyll a-b binding protein 70 278 - -
Vifa1g03931 288 Gene3D Chlorophyll a/b binding protein domain 77 288 - -
Vifa1g03931 288 Pfam Chlorophyll A-B binding protein 90 251 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03931 Vifa-Chr1 603374378 603376242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03931 11 288 Chloroplast and Mitochondria Gene Families AT4G10340 84.229 4.58e-155 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03931 K08916 - gmx:100806585 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03931 1 603374378 603376242 Vifa1g03931 1 603374378 603376242 ECH