Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03920 ATGGAGTGCAACAAGGATGAGGCCACCAGGGCTAAAGAAATTGCCGAGCGGAAGTTTACTGCAAAGGACACTTCGGGTGCAAAGAAGTTTGCTTTGAAAGCCCAAAATTTGTTTCCTTCCCTTGAAGGTATTCCTCAAATGATAGCAACACTTGACGTATATATTTCAGCTGAGAATAAAGTAAAAGGAGAAGCTGATTGGTATGGTATACTTGGTGTGGGCCCCCATTCTGATGATGATACAGTTAGGAAACATTATAGAAAGCTAGCTCTCATGCTTCACCCTGATAAGAACAAATCCATCGGAGCCGACGGGGCCTTTAAACTTATTTCGGAGGCGTGGAGTATACTGTCCGACAAGGCTAGAAGGGCAGCTTATGATGAAAAGATAAATGTAAGAGCACCGAAAGGCTCAACCATTTTTGGTGGTTCGTCAGCAAAAGTGGCGGCAAATGGGGCTAACAATAGCAAAAAGAAAACCCCTTCAAGTGGAAAGACTCAGAAGAATGTTGCCAAAGAAAATACATCATCTTCCAATAAATCGAAATCCACATTTTGGACTACTTGCAAACGCTGTAAAATGCAATACGAGTATCTCAGAGTTTATCTGAACCTTAAACTCGTGTGTCCCAGCTGCCATGAAGCATTTTTGGCTGTAGAAACTGATCCTCCTCCTGCAAGTGGTATCAGACCTGGAACCTCGTGGATTTTTAAACAAAAGCACGATAACGAAGGTAAAAGCAAACCTGTTGTTGGAAAGAACAACACGGCACCTCCAAATGCTGGAGCAGGGTCTAACAAGAACAGCTTCCAGTGGGCTCCATTCTCTAAAACTTCTGGTGTTTCTGATGTGGCTCAGGCGGCAAATGTAGTTCAGCAGGCCTATGATAAGGTGAGGCGAGATCGCGAGGAGGCACAAGCAGCTACCAAAAGGGAAGAGACTTTGAAAAGGAAGCAGAATGCTTCGAAAAAAGGTTACTTTAATCCAGCTAAGAGGAAAAGAAAGGGCATGGATGGAAATGGAGCAGTTGGAGCGTCTAACTTAGGCAGTGGAATCAAGTTCAACTGTACTAGAGATCTCTCCCCAGTTGAACTTCAGAAACTTCTTGTTGAGAAAGCTAGAAAAGAAATTAGCAAGAAACTCGTAGAGTTTCAGTCAAATATTGTTGATAAATCAGCAGCAAAAAAGAGTGGAGATTGCGTCCGGAAAGCAAACCAGAAAGGAGAATTTTCAGCAAGAAACTCTGAGTTCTGCGCTCAAAATAACATTGGGAAGTCAGAAGGTGCTCCTATCATTGATAACACTTGCCCTGAAATTTTGGATTCAATGCTAGTAGATATTCCAGATCCTGATTTTTATGATTTTTACAAGGATCGAACTGAAAGGTCTTTTGGTGAAAATCAAGTATGGGCTGCATATGATTGTGATGATGGGATGCCTCGACATTATGCCATGATTCACAAAGTGATCTCGATGAATCCATTCAAGTTGCAGATCAGTTGGCTGTACCCAAATATCAACAGCGGCGAACCAGGCCCTCTAAATTGGGTTTCTTCTGGCTTTTCAAAAACTTGTGGGCATTTCAGATTAGGCAAACGCGAAATCTATAACTCGATCAGTTATTTTTCTCAGAAAGTAAGGTGGGAAAAAGGTAACGACGGAGCCATTTGTATAAATCCCAAAAAAGGGGAGGTTTGGGCCATCTATAAGAATTGGTCTCCTAGCTGGAATGATCTAATAGCAGATGATGTAATACACAAGTTTGACATGGTTGAAGTACTCGAGGATTTTGTTGAAGAACGGGGTGTAACGGTTATTCCTCTGGTCAAGGTGGTTGGTTTCAAGGCAGTATTTCACCACCACTTAAATGAGAAGGAGATCAAGATCATTCCAAGGAAGGAGATGCTTCGATTTTCTCATCAGGTACCTTCAAACGTACTCACCGGCGAAGAAGCTCCTAACGCTCCAAAGGGTTGTAGGGTGCTGGACCCAGCTGCTACTCCATGTGAACTTCTCGAGGTAATAAAAGTTGCAGAAGAGGAAAACATGATGGACAATGTAGATAAAGTTGTAAAAGAAACTAATCATGAGGAAATGATCGTTGATACCGGAAAACTTGGGGGAACAAAGGAGGGAATGAAGAAAGTTATCCATAAAATAGAAACTCCAAAAGAGGACAGAGGGAAGAAGATATGCAGAGGCTTGTAG 2208 0.423 MECNKDEATRAKEIAERKFTAKDTSGAKKFALKAQNLFPSLEGIPQMIATLDVYISAENKVKGEADWYGILGVGPHSDDDTVRKHYRKLALMLHPDKNKSIGADGAFKLISEAWSILSDKARRAAYDEKINVRAPKGSTIFGGSSAKVAANGANNSKKKTPSSGKTQKNVAKENTSSSNKSKSTFWTTCKRCKMQYEYLRVYLNLKLVCPSCHEAFLAVETDPPPASGIRPGTSWIFKQKHDNEGKSKPVVGKNNTAPPNAGAGSNKNSFQWAPFSKTSGVSDVAQAANVVQQAYDKVRRDREEAQAATKREETLKRKQNASKKGYFNPAKRKRKGMDGNGAVGASNLGSGIKFNCTRDLSPVELQKLLVEKARKEISKKLVEFQSNIVDKSAAKKSGDCVRKANQKGEFSARNSEFCAQNNIGKSEGAPIIDNTCPEILDSMLVDIPDPDFYDFYKDRTERSFGENQVWAAYDCDDGMPRHYAMIHKVISMNPFKLQISWLYPNINSGEPGPLNWVSSGFSKTCGHFRLGKREIYNSISYFSQKVRWEKGNDGAICINPKKGEVWAIYKNWSPSWNDLIADDVIHKFDMVEVLEDFVEERGVTVIPLVKVVGFKAVFHHHLNEKEIKIIPRKEMLRFSHQVPSNVLTGEEAPNAPKGCRVLDPAATPCELLEVIKVAEEENMMDNVDKVVKETNHEEMIVDTGKLGGTKEGMKKVIHKIETPKEDRGKKICRGL 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03920 735 Pfam DnaJ domain 66 127 IPR001623 -
Vifa1g03920 735 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Vifa1g03920 735 Coils Coil 677 697 - -
Vifa1g03920 735 MobiDBLite consensus disorder prediction 242 266 - -
Vifa1g03920 735 PANTHER BNAC03G44070D PROTEIN 1 668 - -
Vifa1g03920 735 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Vifa1g03920 735 Pfam Domain of unknown function (DUF3444) 444 651 IPR024593 -
Vifa1g03920 735 SMART dnaj_3 65 122 IPR001623 -
Vifa1g03920 735 Gene3D DnaJ domain 63 187 IPR036869 -
Vifa1g03920 735 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vifa1g03920 735 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vifa1g03920 735 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vifa1g03920 735 MobiDBLite consensus disorder prediction 150 182 - -
Vifa1g03920 735 Coils Coil 288 318 - -
Vifa1g03920 735 MobiDBLite consensus disorder prediction 249 266 - -
Vifa1g03920 735 CDD DnaJ 66 119 IPR001623 -
Vifa1g03920 735 SUPERFAMILY Chaperone J-domain 58 126 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03920 Vifa-Chr1 602810063 602812270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03920 4 228 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.335 1.74e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03920 - - lja:Lj2g3v0520120.1 996.497