LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g03920	ATGGAGTGCAACAAGGATGAGGCCACCAGGGCTAAAGAAATTGCCGAGCGGAAGTTTACTGCAAAGGACACTTCGGGTGCAAAGAAGTTTGCTTTGAAAGCCCAAAATTTGTTTCCTTCCCTTGAAGGTATTCCTCAAATGATAGCAACACTTGACGTATATATTTCAGCTGAGAATAAAGTAAAAGGAGAAGCTGATTGGTATGGTATACTTGGTGTGGGCCCCCATTCTGATGATGATACAGTTAGGAAACATTATAGAAAGCTAGCTCTCATGCTTCACCCTGATAAGAACAAATCCATCGGAGCCGACGGGGCCTTTAAACTTATTTCGGAGGCGTGGAGTATACTGTCCGACAAGGCTAGAAGGGCAGCTTATGATGAAAAGATAAATGTAAGAGCACCGAAAGGCTCAACCATTTTTGGTGGTTCGTCAGCAAAAGTGGCGGCAAATGGGGCTAACAATAGCAAAAAGAAAACCCCTTCAAGTGGAAAGACTCAGAAGAATGTTGCCAAAGAAAATACATCATCTTCCAATAAATCGAAATCCACATTTTGGACTACTTGCAAACGCTGTAAAATGCAATACGAGTATCTCAGAGTTTATCTGAACCTTAAACTCGTGTGTCCCAGCTGCCATGAAGCATTTTTGGCTGTAGAAACTGATCCTCCTCCTGCAAGTGGTATCAGACCTGGAACCTCGTGGATTTTTAAACAAAAGCACGATAACGAAGGTAAAAGCAAACCTGTTGTTGGAAAGAACAACACGGCACCTCCAAATGCTGGAGCAGGGTCTAACAAGAACAGCTTCCAGTGGGCTCCATTCTCTAAAACTTCTGGTGTTTCTGATGTGGCTCAGGCGGCAAATGTAGTTCAGCAGGCCTATGATAAGGTGAGGCGAGATCGCGAGGAGGCACAAGCAGCTACCAAAAGGGAAGAGACTTTGAAAAGGAAGCAGAATGCTTCGAAAAAAGGTTACTTTAATCCAGCTAAGAGGAAAAGAAAGGGCATGGATGGAAATGGAGCAGTTGGAGCGTCTAACTTAGGCAGTGGAATCAAGTTCAACTGTACTAGAGATCTCTCCCCAGTTGAACTTCAGAAACTTCTTGTTGAGAAAGCTAGAAAAGAAATTAGCAAGAAACTCGTAGAGTTTCAGTCAAATATTGTTGATAAATCAGCAGCAAAAAAGAGTGGAGATTGCGTCCGGAAAGCAAACCAGAAAGGAGAATTTTCAGCAAGAAACTCTGAGTTCTGCGCTCAAAATAACATTGGGAAGTCAGAAGGTGCTCCTATCATTGATAACACTTGCCCTGAAATTTTGGATTCAATGCTAGTAGATATTCCAGATCCTGATTTTTATGATTTTTACAAGGATCGAACTGAAAGGTCTTTTGGTGAAAATCAAGTATGGGCTGCATATGATTGTGATGATGGGATGCCTCGACATTATGCCATGATTCACAAAGTGATCTCGATGAATCCATTCAAGTTGCAGATCAGTTGGCTGTACCCAAATATCAACAGCGGCGAACCAGGCCCTCTAAATTGGGTTTCTTCTGGCTTTTCAAAAACTTGTGGGCATTTCAGATTAGGCAAACGCGAAATCTATAACTCGATCAGTTATTTTTCTCAGAAAGTAAGGTGGGAAAAAGGTAACGACGGAGCCATTTGTATAAATCCCAAAAAAGGGGAGGTTTGGGCCATCTATAAGAATTGGTCTCCTAGCTGGAATGATCTAATAGCAGATGATGTAATACACAAGTTTGACATGGTTGAAGTACTCGAGGATTTTGTTGAAGAACGGGGTGTAACGGTTATTCCTCTGGTCAAGGTGGTTGGTTTCAAGGCAGTATTTCACCACCACTTAAATGAGAAGGAGATCAAGATCATTCCAAGGAAGGAGATGCTTCGATTTTCTCATCAGGTACCTTCAAACGTACTCACCGGCGAAGAAGCTCCTAACGCTCCAAAGGGTTGTAGGGTGCTGGACCCAGCTGCTACTCCATGTGAACTTCTCGAGGTAATAAAAGTTGCAGAAGAGGAAAACATGATGGACAATGTAGATAAAGTTGTAAAAGAAACTAATCATGAGGAAATGATCGTTGATACCGGAAAACTTGGGGGAACAAAGGAGGGAATGAAGAAAGTTATCCATAAAATAGAAACTCCAAAAGAGGACAGAGGGAAGAAGATATGCAGAGGCTTGTAG	2208	0.423	MECNKDEATRAKEIAERKFTAKDTSGAKKFALKAQNLFPSLEGIPQMIATLDVYISAENKVKGEADWYGILGVGPHSDDDTVRKHYRKLALMLHPDKNKSIGADGAFKLISEAWSILSDKARRAAYDEKINVRAPKGSTIFGGSSAKVAANGANNSKKKTPSSGKTQKNVAKENTSSSNKSKSTFWTTCKRCKMQYEYLRVYLNLKLVCPSCHEAFLAVETDPPPASGIRPGTSWIFKQKHDNEGKSKPVVGKNNTAPPNAGAGSNKNSFQWAPFSKTSGVSDVAQAANVVQQAYDKVRRDREEAQAATKREETLKRKQNASKKGYFNPAKRKRKGMDGNGAVGASNLGSGIKFNCTRDLSPVELQKLLVEKARKEISKKLVEFQSNIVDKSAAKKSGDCVRKANQKGEFSARNSEFCAQNNIGKSEGAPIIDNTCPEILDSMLVDIPDPDFYDFYKDRTERSFGENQVWAAYDCDDGMPRHYAMIHKVISMNPFKLQISWLYPNINSGEPGPLNWVSSGFSKTCGHFRLGKREIYNSISYFSQKVRWEKGNDGAICINPKKGEVWAIYKNWSPSWNDLIADDVIHKFDMVEVLEDFVEERGVTVIPLVKVVGFKAVFHHHLNEKEIKIIPRKEMLRFSHQVPSNVLTGEEAPNAPKGCRVLDPAATPCELLEVIKVAEEENMMDNVDKVVKETNHEEMIVDTGKLGGTKEGMKKVIHKIETPKEDRGKKICRGL	735

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g03920	735	Pfam	DnaJ domain	66	127	IPR001623	-
	Vifa1g03920	735	ProSitePatterns	Nt-dnaJ domain signature.	107	126	IPR018253	-
	Vifa1g03920	735	Coils	Coil	677	697	-	-
	Vifa1g03920	735	MobiDBLite	consensus disorder prediction	242	266	-	-
	Vifa1g03920	735	PANTHER	BNAC03G44070D PROTEIN	1	668	-	-
	Vifa1g03920	735	ProSiteProfiles	dnaJ domain profile.	66	130	IPR001623	-
	Vifa1g03920	735	Pfam	Domain of unknown function (DUF3444)	444	651	IPR024593	-
	Vifa1g03920	735	SMART	dnaj_3	65	122	IPR001623	-
	Vifa1g03920	735	Gene3D	DnaJ domain	63	187	IPR036869	-
	Vifa1g03920	735	PRINTS	DnaJ domain signature	86	101	IPR001623	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g03920	Vifa-Chr1	602810063	602812270	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g03920	4	228	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	34.335	1.74e-34	133

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g03920	-		-	lja:Lj2g3v0520120.1	996.497

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