Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03900 ATGGAAGATGAAGAAGAAGAAGTGTTGTCGTCTTCTTCCTCCGATTCCGATTCCGATTTCGATACCGAATCCGGTGACGCTGAAATTGAAGTTGAAGAGCGAAAATCTCAAAATGTAGATGCACTGATAAAAGGGAACCTGATTGTGAAGAGACAATCGTTGCTACCTCGAGTGTTATCAGTAGGTACGAATGGAGGCGCTGTTTGCAGAAAACCGTTTAAACCTCCATCCGATGCTGCTTATACTAACAATCAAGACCTTTCTCGTAGGCTCTTTGCTCGCAAAAGGTTTGTCCCATGGGGTTCCACTACTCCCATTCCCATTCCTAACCCTACTCCCTCACCTTTATCCGAGTTCAATTTGAATATTCCAGTCCCCGAGGACCAACTCAAACCCTCACCTTTGCCCCCTGGAATTGATCCTCTTATACTCTGGCAACCGGATCCTCCAGATTCTAATTTCACACCAATATCAGTTGATACCTTGCTCGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAATTTATGTTTGACTGCGTTGCAGGTCTCTGTGATACACCTGATATCAATGGATGCATTTTGGCAGATGACATGGGTTTGGGGAAAACACTGCAGTCCATTACATTACTATATACTCTTATTTGCCAAGGCTTTGATGGGAAACCTATGGTTAGAAAGGCCATCATTGTCACTCCTACCAGTCTAGTCAGCAATTGGGAAGCTGAAATCAACAAGTGGGTTGGACAAAGAATTCACCTTGTTGCTCTTTGTGAAACCACACGCGAAGATGTTATCTCTGGGATTAACAGTTTTACAAGCCCCCGAAGCAATTTGCAAGTGCTCATTGTTTCATATGAGACATTCCGAATGCATTCATCCAAGTTTAGCGATACTGGCTCCTGTGATCTCCTCATCTGTGATGAAGCTCACAGACTGAAAAATGATCAAACAATAACAAACCGGGCATTGGCTGCTCTCCCATGCAAGCGTAGAGTTTTGTTGTCAGGAACTCCTTTGCAGAATGACTTAGAAGAATTCTTTGCAATGGTTAACTTCACTAATCCCGGAGTATTGGGACCCATTGCTCATTTTCGACGTTATTTTGAGGCGCCAATAATTTGTGGAAGAGAACCTGCTGCTACTGCAGAAGAGAAGAAACTCGGTGCCGAACGTACTGCAGAATTAAGTGCCAAAGTTAATCAGTTCATACTAAGACGGACCAATGCGTTGTTATCAAATCATTTACCACCGAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCGCTACAATCAGATCTATATAAACATTTTATACAATCCAAAAATGTTAAACGGGTGATTAATGAAGAAGTGAAGCAAACAAAGATTTTGGCCTACATAACAGCTCTAAAAAAGTTATGCAATCATCCAAAGCTCATCTATGATACCATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGAACTGCATCCGATTCTTCCCTCCAAATATGTCATCTGGAAGGGCTGGATCATGGACAGGAGAACATGGAGGCTGGGTTGAGCTTTCTGGTAAAATGCAAGTCTTGGCAAGATTACTTGCTCAATTACGTCAGAGAACAAACGATCGCATCGTCCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACAAAGGTACCCTCACTTGAGGCTTGATGGCGCTACATCAATCAGTAAAAGGCAAAAGTTGGTCAACTGCTTGAATGACCCGTCTAAGGATGAATTTGTTTTTCTTTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTAATTGGGGCAAATCGACTCGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTGTGGAGGGATGGACAGAAGAAAAGAGTCTATATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAAATGTCAAAAGAAGGGTTGCAAAAGGTTATTCAGCGAGAGCAAAATGACAGCGTCGCGGCACAGGGTAACTTTCTTTCGACAGAGGATCTTCGCAATTTGTTTACTTTTGATGAGAACGTCAAGTCAGAGATTCATGAAAATATGCGATGCAGTCGGTGCCAAACATATGATGGGCCAAAAGACACTGATGTCTTATCGACAATGATTAATAATGAAGGAGATGATGATGAAACCTCTGATATAGGCGGATTTGCTGAAATTGCAGGCTGCTTAGGGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAATCCATTGGAAGAAGATTTAAGTAGTTGGGGCCATCATTTTTTCCCAACCTCTGTACCAGATGGTATCCTTCAGGCTTCAGCTGGTGATGAGGTGACTTTTGTCTTTACAAACCAAGTTGATGGAAAGCTGGTACCGGTTGACTCAATCAGTCCCAAAGTACAGAAAAAGGAATTACACAGGCCTAGGCGGAATGTTGAGCGAAAATCTACTCCTTTTTCTTTACATAATAAGCTAGTACCAACTGCATCTCATTCATCTTCGATCGGTTGGAAGAAGGAAGCAACTAATTGCGAAAGAATAACCAAAAAAGTTGCCATAGATGTAGCATTGAACACAGAACACTCTCTTGTAAATGAAATATCAGGACAAAAAAGATCATGCCCTGCTGATATCAATGATGAGCACTCTCTTCTAAATGAAGTATCACAGAAAAAAACACATTACGTTGTTGTCAGTGATGATGATTTTGAGTAA 2763 0.4184 MEDEEEEVLSSSSSDSDSDFDTESGDAEIEVEERKSQNVDALIKGNLIVKRQSLLPRVLSVGTNGGAVCRKPFKPPSDAAYTNNQDLSRRLFARKRFVPWGSTTPIPIPNPTPSPLSEFNLNIPVPEDQLKPSPLPPGIDPLILWQPDPPDSNFTPISVDTLLVRFLRPHQREGVQFMFDCVAGLCDTPDINGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKAIIVTPTSLVSNWEAEINKWVGQRIHLVALCETTREDVISGINSFTSPRSNLQVLIVSYETFRMHSSKFSDTGSCDLLICDEAHRLKNDQTITNRALAALPCKRRVLLSGTPLQNDLEEFFAMVNFTNPGVLGPIAHFRRYFEAPIICGREPAATAEEKKLGAERTAELSAKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRVINEEVKQTKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFENCIRFFPPNMSSGRAGSWTGEHGGWVELSGKMQVLARLLAQLRQRTNDRIVLVSNYTQTLDLFAQLCREQRYPHLRLDGATSISKRQKLVNCLNDPSKDEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQREQNDSVAAQGNFLSTEDLRNLFTFDENVKSEIHENMRCSRCQTYDGPKDTDVLSTMINNEGDDDETSDIGGFAEIAGCLGNLKRSEKQVGNPLEEDLSSWGHHFFPTSVPDGILQASAGDEVTFVFTNQVDGKLVPVDSISPKVQKKELHRPRRNVERKSTPFSLHNKLVPTASHSSSIGWKKEATNCERITKKVAIDVALNTEHSLVNEISGQKRSCPADINDEHSLLNEVSQKKTHYVVVSDDDFE 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03900 920 Pfam SNF2-related domain 170 476 IPR000330 GO:0005524|GO:0140658
Vifa1g03900 920 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 525 686 IPR001650 -
Vifa1g03900 920 FunFam DNA repair and recombination protein RAD54 141 407 - -
Vifa1g03900 920 Gene3D - 430 699 - -
Vifa1g03900 920 SMART helicmild6 552 636 IPR001650 -
Vifa1g03900 920 Pfam Helicase conserved C-terminal domain 527 635 IPR001650 -
Vifa1g03900 920 Gene3D - 408 715 IPR027417 -
Vifa1g03900 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 408 IPR027417 -
Vifa1g03900 920 SMART ultradead3 163 366 IPR014001 -
Vifa1g03900 920 FunFam Predicted protein 430 504 - -
Vifa1g03900 920 CDD SF2_C_SNF 519 647 - -
Vifa1g03900 920 PANTHER SNF2/RAD54 FAMILY MEMBER 72 798 - -
Vifa1g03900 920 CDD DEXHc_RAD54 167 408 - -
Vifa1g03900 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 792 IPR027417 -
Vifa1g03900 920 Gene3D - 146 407 IPR038718 -
Vifa1g03900 920 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 358 IPR014001 -
Vifa1g03900 920 MobiDBLite consensus disorder prediction 1 35 - -
Vifa1g03900 920 FunFam DNA repair and recombination protein RAD54-like 513 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03900 Vifa-Chr1 600690130 600697815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03900 516 694 RAD5 or RAD16-like Gene Family AT5G43530 33.889 9.71e-22 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa1g03900 SNF2_N 9.2e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03900 K10875 - gmx:100781631 1377.07