Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03891 ATGCCCGTCATGAAAAAGAATTCTGAGCAAAATCGTTTTGAAGCTGTATTCAACAAGCTGCTGAGTCAGATTGGGGAACCTGTTGACTTTGAACTTCCAGATTGGATTAAGATAAGAACAACACAGTACACCCATATAAAGCGCAATATATATGTCACTAAGAAGAACAAGAGAAAGTTTGATGATGGCATATTCTGCTCCTGCGAATCTTCACCTGACTCTACTAATGTATGCGGTAGAGATTGTCAATGTGGGATGCTTCTGTCATGCTGTTCTTCAGGCTGCAAATGTGGGGTCTTGTGTCTCAACAAAGCTTTTCAGCATCGCCCTGTGAAAAAGCTGAAATTGGTTAAGACTGAGAAATGTGGCTCCGGAATTGTGGCGGATGAAGATATCAAGCTTGGGGAGTTTGTCATTGAATATGTTGGAGAAGTCATCGATGATAAAACATGCGAACAAAGGCTCTGGAATATGAAAGATCGTGGGGAAACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACAAATAAGGGAAACAAATCAAGATATATCAATCATAGTTGCAACCCGAATACCGAGATGCAGAAATGGATAATAGAGGGTGAAACAAGAATTGGTATATTTGCAGCTCGTGACATAGAGAAGGGCGAGCATCTGACTTATGACTACCAGTTTGTTCAATTTGGTGCAGACCAAGATTGCCACTGTGGAGCTATTCAGTGTAGGCGTAAACTGGGTGCACGGCCTACCAAGCCTAAATCAGATGCTGCATTAAAATTAGTTGCATATCAGGTTTGTCAAAATGGAGGCTTGCAAATTGGTCAAATTGGAAGTTCCCGGGTGGTTGACCAAACAAAATGCTTACACAATTGTGTTGATGAAGTTATCATGATTAAACAACTTGGAAATGTCAGATTTGGGATTATTAAATGGTTTGATGCATATACCCTCAAACATAAGATCATGTTTGAGGATGGTTGTGTTGAAATTCATGACATGTCAAAAGAAGATTGGGAACTAGTGAGATTGTGA 1047 0.3973 MPVMKKNSEQNRFEAVFNKLLSQIGEPVDFELPDWIKIRTTQYTHIKRNIYVTKKNKRKFDDGIFCSCESSPDSTNVCGRDCQCGMLLSCCSSGCKCGVLCLNKAFQHRPVKKLKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEQRLWNMKDRGETNFYLCEINRDMVIDATNKGNKSRYINHSCNPNTEMQKWIIEGETRIGIFAARDIEKGEHLTYDYQFVQFGADQDCHCGAIQCRRKLGARPTKPKSDAALKLVAYQVCQNGGLQIGQIGSSRVVDQTKCLHNCVDEVIMIKQLGNVRFGIIKWFDAYTLKHKIMFEDGCVEIHDMSKEDWELVRL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03891 348 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 288 IPR025787 -
Vifa1g03891 348 PANTHER SET DOMAIN PROTEINS 11 265 - -
Vifa1g03891 348 SMART set_7 112 235 IPR001214 GO:0005515
Vifa1g03891 348 ProSiteProfiles AWS domain profile. 61 110 IPR006560 GO:0005634|GO:0042054
Vifa1g03891 348 SMART PostSET_3 235 251 IPR003616 -
Vifa1g03891 348 ProSiteProfiles SET domain profile. 112 229 IPR001214 GO:0005515
Vifa1g03891 348 CDD SET_ASHR3-like 113 251 - -
Vifa1g03891 348 ProSiteProfiles Post-SET domain profile. 235 251 IPR003616 -
Vifa1g03891 348 Gene3D SET domain 30 266 IPR046341 -
Vifa1g03891 348 SUPERFAMILY SET domain 37 241 IPR046341 -
Vifa1g03891 348 Pfam SET domain 123 228 IPR001214 GO:0005515
Vifa1g03891 348 SMART shorttest3 61 111 IPR006560 GO:0005634|GO:0042054
Vifa1g03891 348 FunFam Histone-lysine N-methyltransferase 30 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03891 Vifa-Chr1 599487631 599493747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03891 91 247 C2H2 Transcription Factor Family AT2G23740 36.158 1.91e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g03891 SET 2.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03891 - - gmx:100808183 565.844