Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03883 ATGGTGAAGGAGAGCGAGTACTATGACGTGCTTGGTGTGAGTCCAAGTGCATCCGAAGCTGAGATTAAGAAAGCTTATTACATGAAGGCTCGGCAAGTGCATCCGGATAAAAACCCAAACGACCCTCTTGCTGCTCAAAATTTTCAGATTTTAGGTGAGGCTTACCAAGTTCTCAGTGATCCACCTCAAAGGCAAGCTTATGATGCACACGGAAAATCTGGAATCTCAACTGAAGCCATTATTGATCCTGCTGCTATCTTTGCCATGCTTTTTGGTAGTGAGCTTTTTGACGAATATATTGGCCAGTTAGCCATGGCATCCATGGCTTCCATGGACATTTTTATTGAGGGAGAACAATTTGATACTAAAAAGTTGCAAGACAATATGCGGGTTGTTCAGAAAGAGAGAGAAGAAAGGCTCGCAGAAATACTAAAAAACAGACTCAACCAGTATGTCCAGGGAAACAAACAAGACTTTGTTAATCATGCAGAAGCTGAACTAGCCCGACTATCCAATGCTGCTTATGGCGTCGATATGCTGAATACCATTGGCTACATTTATGCAAGACAGGCAGCAAAAGAGCTAGGGAAAAAAGCTATTTATTTGGGTGTGCCTTTTGTTGCCGAGTGGTTTAGAAACAAAGGACACTTCATCAAATCTCAAGTTACAGCGGCAACAGGGGCAATTGCTTTGATCCAATTGCAGGAGGATATGAAAAATCAACTCAGTTCAGAAGGGAACTACACTGAAGAAGAGCTTGAAGAATACATGCAATCTCACAAGAAGTTAATGATTGACTCTCTGTGGAAGCTTAACGTGGCTGACATCGAGGCCACTCTTTCCCGTGTGTGTCAAATGGTTCTCCAAGACAGCAATGTCAAGAAAGAAGAACTACGGGGACGAGCAAAAGGGTTGAAAACTCTTGGTAAAATCTTCCAGAGGGTTAAGACAGCTAATGGGAATGAGGGTGAATATATACCAAACAAAGAAATGCATAAATTGAATGGAAGTGAAACTAGCAATGGCGTTTCTTCTCCTAGTACATCACCCAAATCATCGGGTCCTGATTTTTCAACTCAGGCTGTATCGCAGAGCCCCTATGTGGAGGCTCCACACTTTGCAGGCATGCAATTTGACTACAACTTCCCTAGGCCAACCGCCCCTCCAGGTGCCCACAGACCTGCTCCAAATAGCAAGGATTGA 1203 0.4356 MVKESEYYDVLGVSPSASEAEIKKAYYMKARQVHPDKNPNDPLAAQNFQILGEAYQVLSDPPQRQAYDAHGKSGISTEAIIDPAAIFAMLFGSELFDEYIGQLAMASMASMDIFIEGEQFDTKKLQDNMRVVQKEREERLAEILKNRLNQYVQGNKQDFVNHAEAELARLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFVAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKNQLSSEGNYTEEELEEYMQSHKKLMIDSLWKLNVADIEATLSRVCQMVLQDSNVKKEELRGRAKGLKTLGKIFQRVKTANGNEGEYIPNKEMHKLNGSETSNGVSSPSTSPKSSGPDFSTQAVSQSPYVEAPHFAGMQFDYNFPRPTAPPGAHRPAPNSKD 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03883 400 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 332 - -
Vifa1g03883 400 CDD DnaJ 6 60 IPR001623 -
Vifa1g03883 400 MobiDBLite consensus disorder prediction 321 400 - -
Vifa1g03883 400 SMART dnaj_3 5 63 IPR001623 -
Vifa1g03883 400 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Vifa1g03883 400 Pfam DnaJ domain 6 68 IPR001623 -
Vifa1g03883 400 FunFam Chaperone protein dnaJ 10 1 83 - -
Vifa1g03883 400 Pfam X-domain of DnaJ-containing 133 324 IPR026894 -
Vifa1g03883 400 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Vifa1g03883 400 PRINTS DnaJ domain signature 43 63 IPR001623 -
Vifa1g03883 400 PRINTS DnaJ domain signature 63 82 IPR001623 -
Vifa1g03883 400 PRINTS DnaJ domain signature 26 41 IPR001623 -
Vifa1g03883 400 PRINTS DnaJ domain signature 8 26 IPR001623 -
Vifa1g03883 400 Gene3D DnaJ domain 1 84 IPR036869 -
Vifa1g03883 400 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Vifa1g03883 400 MobiDBLite consensus disorder prediction 333 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03883 Vifa-Chr1 598005466 598010130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03883 7 70 C2H2 Transcription Factor Family AT1G74250 43.478 6.71e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03883 - - cam:101512264 693.345