Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03882 ATGCTTGATAATCCATCTTTTGCATTATTTGAAGATTATCTAATAATGGCTAATTTGCTTACACTGTTTTTTGTCATAATGAGTTGTTTCAAATTAGGAGTATATGGATTGAGCATGAACTACTACTTGTTTAGCTGCCCTTTTGTTGATTCTGTTGTTAAAAACGATGTCAACAAAGCTCTGCAGGATGATCCCACCCTAGCAGCAGGTTTAGTTAGAATGCACTTCCATGATTGTTTCATAGAGGGATGTGATGGGTCAGTTCTAATAGACTCCACTAAGGAGAACACAGCAGAAAAAGATTCACCTGCAAATTTGAGCTTGAAAGGATACAAAGTCATAGATGATATCAAACTAGAGCTTGAAAAGCAATGTCCTGGAGTGGTTTCATGTGCTGATATTCTTGCCATGGCTGCTAGAGATGCTGTTTTCTTTGCTGGTGGTCCTGTGTATAACATACCAAAAGGAAGGAAAGATGGAACAAGGTCTAAAATTGAGGATACTTTCAATCTGCCTCCTCCATTTTTCAATGTATCTCAGCTCATTAGGATGTTTGGCCAACATGGTTTTTCTCCAAAAGACATGGTGGCTCTTTCCGGTAACAATTGTGCTTTAATTAATATATCCATCAATGTTATAGTTCGGTTTAGAACTAAAATTGATAGGCAAAAGGATGCGGTAATTAATACTTTGTTGTGGTGGGATCCTATTTTTATGCGGCGAAGAGGGATTGATTTGATTAACAATTCAGTTGGTATTAGAATAAAAGGAGCTCACACACTAGGAGCAGCAAGGTGTGTTTCTTTCAAGGAAAGACTAACCCAATTGGATCAAACATTGGATTCAGAATTTGCAAAAACACTCTCCAAAACATGCAACATTGGTGACAATGCTGAGCAACCTTTTGATGCAACAAGAAACGATTTTGATAATTCATACTTCAATTCTTTGGTCTCAAACAATGGTGTTCTTACTTCGGACCAAACATTGTACAATAGCGCACAAACTAGGAACATTGTGAACATGTATGCAATGAATCAGGCATTGTTCTTCTTGGATTTTCAACAAGCTATGGTGAAGATGAGCTTGCTTGATGTAAAAGAAGGTTCTAAGGGGGAAGTAAGAAAAAATTGCCATAAAATAAATTGA 1149 0.3699 MLDNPSFALFEDYLIMANLLTLFFVIMSCFKLGVYGLSMNYYLFSCPFVDSVVKNDVNKALQDDPTLAAGLVRMHFHDCFIEGCDGSVLIDSTKENTAEKDSPANLSLKGYKVIDDIKLELEKQCPGVVSCADILAMAARDAVFFAGGPVYNIPKGRKDGTRSKIEDTFNLPPPFFNVSQLIRMFGQHGFSPKDMVALSGNNCALINISINVIVRFRTKIDRQKDAVINTLLWWDPIFMRRRGIDLINNSVGIRIKGAHTLGAARCVSFKERLTQLDQTLDSEFAKTLSKTCNIGDNAEQPFDATRNDFDNSYFNSLVSNNGVLTSDQTLYNSAQTRNIVNMYAMNQALFFLDFQQAMVKMSLLDVKEGSKGEVRKNCHKIN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03882 382 Gene3D Peroxidase, domain 2 172 202 - -
Vifa1g03882 382 PANTHER - 21 202 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 SUPERFAMILY Heme-dependent peroxidases 255 382 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 CDD secretory_peroxidase 36 381 IPR033905 GO:0004601|GO:0042744
Vifa1g03882 382 ProSiteProfiles Plant heme peroxidase family profile. 36 382 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 Gene3D - 40 171 - -
Vifa1g03882 382 FunFam Peroxidase 40 174 - -
Vifa1g03882 382 PRINTS Plant peroxidase signature 70 90 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 PRINTS Plant peroxidase signature 109 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 PRINTS Plant peroxidase signature 46 65 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 PRINTS Plant peroxidase signature 147 162 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 PRINTS Plant peroxidase signature 128 138 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 PRINTS Plant peroxidase signature 356 369 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 PRINTS Haem peroxidase superfamily signature 68 82 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 PRINTS Haem peroxidase superfamily signature 147 159 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 PRINTS Haem peroxidase superfamily signature 302 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 PRINTS Haem peroxidase superfamily signature 129 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 Pfam Peroxidase 53 345 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g03882 382 Gene3D - 362 382 - -
Vifa1g03882 382 FunFam Peroxidase 241 361 - -
Vifa1g03882 382 ProSitePatterns Peroxidases active site signature. 68 79 IPR019794 GO:0004601
Vifa1g03882 382 Gene3D Peroxidase, domain 2 254 361 - -
Vifa1g03882 382 SUPERFAMILY Heme-dependent peroxidases 36 200 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03882 Vifa-Chr1 597895079 597897895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03882 253 382 Peroxidase AT4G33420 70.769 1.88e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03882 K00430 - aew:130776811 413.69