LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g03882	ATGCTTGATAATCCATCTTTTGCATTATTTGAAGATTATCTAATAATGGCTAATTTGCTTACACTGTTTTTTGTCATAATGAGTTGTTTCAAATTAGGAGTATATGGATTGAGCATGAACTACTACTTGTTTAGCTGCCCTTTTGTTGATTCTGTTGTTAAAAACGATGTCAACAAAGCTCTGCAGGATGATCCCACCCTAGCAGCAGGTTTAGTTAGAATGCACTTCCATGATTGTTTCATAGAGGGATGTGATGGGTCAGTTCTAATAGACTCCACTAAGGAGAACACAGCAGAAAAAGATTCACCTGCAAATTTGAGCTTGAAAGGATACAAAGTCATAGATGATATCAAACTAGAGCTTGAAAAGCAATGTCCTGGAGTGGTTTCATGTGCTGATATTCTTGCCATGGCTGCTAGAGATGCTGTTTTCTTTGCTGGTGGTCCTGTGTATAACATACCAAAAGGAAGGAAAGATGGAACAAGGTCTAAAATTGAGGATACTTTCAATCTGCCTCCTCCATTTTTCAATGTATCTCAGCTCATTAGGATGTTTGGCCAACATGGTTTTTCTCCAAAAGACATGGTGGCTCTTTCCGGTAACAATTGTGCTTTAATTAATATATCCATCAATGTTATAGTTCGGTTTAGAACTAAAATTGATAGGCAAAAGGATGCGGTAATTAATACTTTGTTGTGGTGGGATCCTATTTTTATGCGGCGAAGAGGGATTGATTTGATTAACAATTCAGTTGGTATTAGAATAAAAGGAGCTCACACACTAGGAGCAGCAAGGTGTGTTTCTTTCAAGGAAAGACTAACCCAATTGGATCAAACATTGGATTCAGAATTTGCAAAAACACTCTCCAAAACATGCAACATTGGTGACAATGCTGAGCAACCTTTTGATGCAACAAGAAACGATTTTGATAATTCATACTTCAATTCTTTGGTCTCAAACAATGGTGTTCTTACTTCGGACCAAACATTGTACAATAGCGCACAAACTAGGAACATTGTGAACATGTATGCAATGAATCAGGCATTGTTCTTCTTGGATTTTCAACAAGCTATGGTGAAGATGAGCTTGCTTGATGTAAAAGAAGGTTCTAAGGGGGAAGTAAGAAAAAATTGCCATAAAATAAATTGA	1149	0.3699	MLDNPSFALFEDYLIMANLLTLFFVIMSCFKLGVYGLSMNYYLFSCPFVDSVVKNDVNKALQDDPTLAAGLVRMHFHDCFIEGCDGSVLIDSTKENTAEKDSPANLSLKGYKVIDDIKLELEKQCPGVVSCADILAMAARDAVFFAGGPVYNIPKGRKDGTRSKIEDTFNLPPPFFNVSQLIRMFGQHGFSPKDMVALSGNNCALINISINVIVRFRTKIDRQKDAVINTLLWWDPIFMRRRGIDLINNSVGIRIKGAHTLGAARCVSFKERLTQLDQTLDSEFAKTLSKTCNIGDNAEQPFDATRNDFDNSYFNSLVSNNGVLTSDQTLYNSAQTRNIVNMYAMNQALFFLDFQQAMVKMSLLDVKEGSKGEVRKNCHKIN	382

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g03882	382	Gene3D	Peroxidase, domain 2	172	202	-	-
	Vifa1g03882	382	PANTHER	-	21	202	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa1g03882	382	SUPERFAMILY	Heme-dependent peroxidases	255	382	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Vifa1g03882	382	CDD	secretory_peroxidase	36	381	IPR033905	GO:0004601\|GO:0042744
	Vifa1g03882	382	ProSiteProfiles	Plant heme peroxidase family profile.	36	382	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Vifa1g03882	382	Gene3D	-	40	171	-	-
	Vifa1g03882	382	FunFam	Peroxidase	40	174	-	-
	Vifa1g03882	382	PRINTS	Plant peroxidase signature	70	90	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa1g03882	382	PRINTS	Plant peroxidase signature	109	122	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vifa1g03882	382	PRINTS	Plant peroxidase signature	46	65	IPR000823	GO:0004601\|GO:0006979\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g03882	Vifa-Chr1	597895079	597897895	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g03882	253	382	Peroxidase	AT4G33420	70.769	1.88e-57	190

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g03882	K00430		-	aew:130776811	413.69

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