Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03867 ATGGCAATGGACGATTCACATTCATCTCTGTTCAACCTAGGTATTCTCGACACTCTCACCCAAGACGAACTTCACGAAATCCTCGACAGCTACGACGCCTTCTGCAACGCCACACAATCTCTTCTCGGCGGTGCCGGCGACCTCTCATACGGTGCTCAATTTGTTTCCCATGTTCACACCCTATGCAAACACGGCCTCGAATCACTAGTTCGCGACCACTTTCTCAGAGTATTAGAGGAAACTTTTGAGCGAAATGGGGCGTCCAGGTTTTGGCGGCACTTTGTTCCGTATGCTGATTTTGTTGATTTGGACAAGCATGGTGATATCAATATTGATGAGGATGAGATTGAAAGTGTGTTGTATAATGCTTTGGAAGAAATCTCTTTGGAGAAACAGTATCAGGAGAAGTGTCTGTTAATTAACTACATTCAGGTAATATATGCTAAAATGGAAATAGAGTTGTCGTATAATGACTTGGTTGAAAAGACAAGAGCCAGACATTCAGATATTGAATCCAGTTCATCTTCAAAGACTACCGGTGGTTTGGGAATGTATTGGTGGAGAGGTGGTAGGCTTTCTCGAAAGTTGTTTAATTGCAAGGTCCTTCCTCGTTCCTTTGTTACCAAGGCTGCTAGACAAGCTGGGTTTAGAAAGATACCAGGTATTTTATATCCTGAAAATTCAGACTTTGCTAAGAGAAGCAGATGTGTTTCCTGGCGAGCTGTTGTTGAGATGTCAACAAGCGTTGATCAGCTGGCTTTACAGGCTACTGCCTTATACAAATTAGTTGCGGAACGAGGTCCATGGAGCTCTTTGTCCAGATGGGCACTGGAAGCATACTTAAAAGGTGATGTTGGCAAGGCATATATGTTGTATTCAAGAATGGCCGAGATGGGCTATGAGGTGGCACAAAGTAATGCTGCTTGGATTCTTGATAAATATGGAGAACGAAGCATGTGCATGGGTGAATCTGGACTTTGCACTGATGCAGAAAGGCATCAGCGGGCACACTCTTTGTGGTGGCAAGCTTCTGAGCAGGGTAACGAACATGCTGCTTTACTAATTGGAGACGCATATTACTATGGCAGGGGAACTGTCAGGGATTATGACCGAGCTGCTGAGGCTTACATGCATGCCAAATCGCAATCTAATGCACAGGCCATGTTTAATCTTGGGTACATGCATGAGCATGGCCAATGA 1200 0.445 MAMDDSHSSLFNLGILDTLTQDELHEILDSYDAFCNATQSLLGGAGDLSYGAQFVSHVHTLCKHGLESLVRDHFLRVLEETFERNGASRFWRHFVPYADFVDLDKHGDINIDEDEIESVLYNALEEISLEKQYQEKCLLINYIQVIYAKMEIELSYNDLVEKTRARHSDIESSSSSKTTGGLGMYWWRGGRLSRKLFNCKVLPRSFVTKAARQAGFRKIPGILYPENSDFAKRSRCVSWRAVVEMSTSVDQLALQATALYKLVAERGPWSSLSRWALEAYLKGDVGKAYMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGLCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTVRDYDRAAEAYMHAKSQSNAQAMFNLGYMHEHGQ 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03867 399 Gene3D Tetratricopeptide repeat domain 241 399 IPR011990 GO:0005515
Vifa1g03867 399 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 255 399 IPR044623 GO:0030433
Vifa1g03867 399 SUPERFAMILY HCP-like 280 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03867 Vifa-Chr1 595736236 595740739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03867 160 317 PHD Transcription Factor Family AT5G12400 41.139 4.29e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03867 K14026 - gmx:732556 295.434