Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03863 ATGGGCAATACATGCCGTGGATCTTTGAAAGGAAAGTATATCCAGGGCTTCCCCCAGCCCGACTCAGACACTTCCGTTTCCAATTCCAAACGTGATTCCCAACAATCTCCCAAACCCAATCATCCACCACAACCCTTCAAATTCACCACCTCCGCCATGCGCAGAACCGCCGATAACCAGACTTATTATGTCTTGGGTCATAAGACTCCCAACATACGTGATCTATACACCCTTGGCCGGAAACTCGGTCAAGGTCAATTCGGTACTACTTTCTTAGCTGTTGATAATTCAACCTCTATTGAGTATGCTTGCAAATCTATTTCCAAGAGGAAACTTATTTCCAGGGAGGATGTCGAGGATGTCAGGAGGGAAATTCAGATCATGCATCATTTGGCTGGTCATAAGAATATTGTTACCATTAAGGGTGCTTATGAGGATTCACTTTATGTTCATATTGTTATGGAGCTTTGTTCTGGGGGTGAGCTCTTTGATCGGATTATCCAGAGGGGTCACTATACCGAGAGAAAGGCCGCCGAGTTGACCAAGATTATTGTTGGTGTTGTCGAAGCTTGTCATTCTCTTGGGGTTATGCATCGAGATCTCAAGCCTGAGAACTTTTTGTTGGTCAATAAAGATGATGATTTCTCTCTTAAAGCTATTGACTTTGGCCTCTCCGTTTTCTTCAAACCAGGTCAAGTTTTCACAGATGTAGTTGGCAGTCCATACTATGTTGCTCCTGAGGTTCTCCTCAAGCATTATGGCCCTGAGGCAGATGTCTGGACCGCGGGTGTCATACTTTATATATTGCTCAGCGGTGTGCCACCGTTTTGGGCAGAGACCCAGCAGGGTATATTTGACGCAGTGTTAAAGGGACATATAGATTTTGAATCTGATCCATGGCCTTTAATATCCAATAGTGGAAAAGATCTTATTAGAAAGATGTTGTGTTCTCGGCCTTCAGATCGCTTGACTGCCCATGAAGTTTTATGTCATCCTTGGATATGTGAAAATGGCGTTGCCCCTGACAGAGCAATTGATCCTGCTGTTCTTTCTCGTCTCAAGCAGTTTTCTGCAATGAATAAGCTAAAGAAGATGGCTTTACGGGTAATTGCGGAAAGTCTATCCGAGGAGGAAATTGCTGGTTTGAGGGAAATGTTTCAGGCTATGGATACCGATAGCAGTGGTGCAATCACTTTTGATGAACTCAAAGCTGGTCTAAGAAGATATGGGTCTACCCTTAAGGATACGGAAATACGTGATCTTATGGAAGCGGCTGATGTGGACAACAGTGGAACTATAGATTATGGGGAGTTTATTGCTGCAACAGTTCATCTCAACAAACTGGAGCGTGAGGAGCACCTTGTTGCAGCATTCCGATATTTTGACAAGGACGGAAGTGGTTATATTACAGTTGATGAACTTCAACAAGCTTGTGCAGAACATAACATGACTGATGTTTTTCTTGAAGACATTATCAAGGAAGTTGATCAAGATAACGATGGAAGGATTGATTATAGTGAATTTTCTGCCATGATGCAAAAAGGCAATGTTGGGGTTGCTTTTAGTTGTGCTCATTATGTGCAGGTTGTATACAGCAAAGCCAGAAAGAGCAAGCATAAATATTTACAAAAAAAAAGTATTTTTATCCTGCCGACGGATCCTATATCGTGGAGAAAACTGGGGATTGTGGATGCTCCTGCACGAGCAAGCACTCATCAAGTGTGA 1725 0.4307 MGNTCRGSLKGKYIQGFPQPDSDTSVSNSKRDSQQSPKPNHPPQPFKFTTSAMRRTADNQTYYVLGHKTPNIRDLYTLGRKLGQGQFGTTFLAVDNSTSIEYACKSISKRKLISREDVEDVRREIQIMHHLAGHKNIVTIKGAYEDSLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFESDPWPLISNSGKDLIRKMLCSRPSDRLTAHEVLCHPWICENGVAPDRAIDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDSSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYGEFIAATVHLNKLEREEHLVAAFRYFDKDGSGYITVDELQQACAEHNMTDVFLEDIIKEVDQDNDGRIDYSEFSAMMQKGNVGVAFSCAHYVQVVYSKARKSKHKYLQKKSIFILPTDPISWRKLGIVDAPARASTHQV 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03863 574 FunFam Calcium-dependent protein kinase 1 342 516 - -
Vifa1g03863 574 Gene3D - 344 516 - -
Vifa1g03863 574 ProSiteProfiles EF-hand calcium-binding domain profile. 413 448 IPR002048 GO:0005509
Vifa1g03863 574 FunFam Calcium-dependent protein kinase 1 78 161 - -
Vifa1g03863 574 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Vifa1g03863 574 ProSitePatterns EF-hand calcium-binding domain. 462 474 IPR018247 -
Vifa1g03863 574 SUPERFAMILY Protein kinase-like (PK-like) 59 358 IPR011009 -
Vifa1g03863 574 MobiDBLite consensus disorder prediction 1 48 - -
Vifa1g03863 574 SUPERFAMILY EF-hand 358 515 IPR011992 -
Vifa1g03863 574 Gene3D Phosphorylase Kinase; domain 1 78 161 - -
Vifa1g03863 574 ProSitePatterns EF-hand calcium-binding domain. 426 438 IPR018247 -
Vifa1g03863 574 Pfam EF-hand domain pair 452 513 IPR002048 GO:0005509
Vifa1g03863 574 Pfam EF-hand domain pair 382 442 IPR002048 GO:0005509
Vifa1g03863 574 MobiDBLite consensus disorder prediction 18 37 - -
Vifa1g03863 574 ProSiteProfiles Protein kinase domain profile. 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03863 574 CDD EFh 453 513 IPR002048 GO:0005509
Vifa1g03863 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vifa1g03863 574 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Vifa1g03863 574 CDD STKc_CAMK 76 333 - -
Vifa1g03863 574 SMART efh_1 453 481 IPR002048 GO:0005509
Vifa1g03863 574 SMART efh_1 417 445 IPR002048 GO:0005509
Vifa1g03863 574 SMART efh_1 487 515 IPR002048 GO:0005509
Vifa1g03863 574 SMART efh_1 381 409 IPR002048 GO:0005509
Vifa1g03863 574 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509
Vifa1g03863 574 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Vifa1g03863 574 SMART serkin_6 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03863 574 PANTHER SERINE/THREONINE-PROTEIN KINASE 68 508 - -
Vifa1g03863 574 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
Vifa1g03863 574 ProSiteProfiles EF-hand calcium-binding domain profile. 488 518 IPR002048 GO:0005509
Vifa1g03863 574 Gene3D Transferase(Phosphotransferase) domain 1 162 343 - -
Vifa1g03863 574 FunFam Calcium-dependent protein kinase 5 162 342 - -
Vifa1g03863 574 Pfam Protein kinase domain 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03863 Vifa-Chr1 595624803 595629833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03863 1 520 EF-hand Containing Proteins AT2G17290 82.798 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa1g03863 Pkinase 3.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03863 K13412 - gmx:100778173 932.169