Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03849 ATGAGTGTTCCTGTGACATCATCGAACGAAGTTACCGAGAAGATGGAGAAAGAAGAAAATGCAAACCATGGTGATGATGTGCTTGATATAGAAAATGACGGTAGCTTTGATGGAAACGGCGAAGAAATCGGAAGATATTGGTCACAGTTTTCTGAAAGGAACATGACATATGAAGAACCTCTTCTTGTGAAGAGGATCAACACTACCTCTCAGATTGCCATAGTTGGTTCCAACCTTTGCCCTATCGAAAGCCTTGATTATGAGATTTTTGATAGTGAAATATTTAACCAGGACTGGAGGTCCAGGAAGAAGGTTCAGATATTCCAATACGTGGTACTTAAATGGGTATTTGCTCTTCTTATTGGATTAGGAACCGGATTGGTTGGTCTTTTCAATAACGTTGCTGTCGAGAACATAGCCGGTTTCAAGCTTCTTCTTACAACTAGTCTCATGTCTAAACAAAGATTTTTTGAGGCGTTTCTAGTATATGCCGGTTTGAATATGGGTTTAGCAGCAGCGGCTGCAGCTCTCTGTGCTTTCATTGCTCCGTCGGCAGCAGGCTCTGGCATTCCGGAGGTTAAAGCATATCTCAACGGCATCGATGCTCACTCGATTCTGGCTCCATCCACTCTTTTTGTAAAGATTGTCGGTTCCATCTTTGGAGTGTCTGCTGGATTTGTGGTGGGAAAAGAAGGACCTATGGTTCATACAGGAGCATGCATAGCTTCTATTTTGGGGCAAGGCGGATCTCGAAAGTATGGTTTGACTTGGAGTTGGCTTAGGTATTTCAAAAATGACCGAGACCGGCGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTTGCCGCAGCCTTTCGATCTCCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCCTGGTGGAGGAGTGCTCTTCTATGGAGGTCATTTTTTACTACAGCAGTAGTTGCTATTGTTTTACGAGGTGGAATTCAATTTTGTTCGACCGGGAAATGTGGACTATTTGGCGAAGGTGGTCTTATATTGTATGATGTTAGTTCGGCCAAAGTAACATATAATAGCGGTGACATTTTCGCAGTTATAGTCTTGGCGACTATTGCTGGTATTCTCGGAAGCATTTATAATTTCCTCGTCGACAAGGTTGTTCGTTCATATAGCATCATCAATGAAAAGGGTCCATTTTTCAAAATCTCTCTTGCAATTACAGTTTCTCTTTTGACATCATGTTGTTATTATTTCCTACCATGGATTGCAAACTGTCTCCCTTGCCCTACAGATGGGACGATAGCCTGCCCCTCAGTAGACGAATCCGGAGAATACAAAGTCTTCCAATGTCCGCCGGGCTACTACAATGATCTCGCTTCCCTCTTTCTAAACACCAATGACGATGCTATTCGTAATCTATTCAGTCCTAAGATAAACAAAGAGTTTCACATTTCAAGTTTGTTCATCTTCTTTGCAGCTGTTTACTTTCTCGGTATAATTACCTATGGTATCGCTGTTCCATCTGGACTTTTCATTCCTGTCATACTTGCTGGTGCTGCGTACGGCCGTGTTATCGGTAGACTCTTCGAACCGATCACAAAACTTGATCGAGGACTCTTTTCTCTCCTAGGAGCTGCCTCTTTCCTCGGCGGCACAATGAGAATGACGGTCTCGATTTGTGTTATATTACTCGAACTCACTAATGATCTCTTGTTACTTCCACTCGTGATGTTGGCATTATTAATCTCGAAATCTGTGGCTGACATTTTCAACAAAGGTGTCTATGATCAAATATTGAAGATCAAAGGACTTCCTTATTTAGAAGCGCACGCCGAACCATACATGAGGAACATAGCTACACGCGATGTTGTCACGGGTCCATTAATGTCCTTTTCTGGCATCGAAATGGTCGGGAATATTTTACATGTTTTGAATACAACAGGACACAACGGGTTTCCGGTCATTGATGAACCACCTTTCTCGGACTCACGAGAGTTGTGTGGACTCGTGCTAAGGTCTTATTTACTAGTTTTACTAAAGGCAAAGAATTTTACAAGAGAGAGGGTTTTCGCGGATGCGGGTATCTTAGAAAATATTTCGGTGCTGGATTTTGGAAAGGCGGGATCGGGAAAAGGAGTCAAATTAGAAGATTTAGATATCGGAGACGAAGATTTGGATATGTACGTTGATCTTCATCCGATAACCAATACATCACCGTACACTGTAGTTGAGACAATGTCACTTGCTAAAGCCGCTATTATTTTCCGTCAACAAGGACTACGGCACATGTGTGTTGTTCCGAAGAGCCAAGAGAGACCTCCTATCGTAGGGATTCTTACGCGCCACGATTTCATGCCGGAACATGTTTTGGGACTTTACCCTGATATCAAGCATCACAAATGGCACTGA 2400 0.4308 MSVPVTSSNEVTEKMEKEENANHGDDVLDIENDGSFDGNGEEIGRYWSQFSERNMTYEEPLLVKRINTTSQIAIVGSNLCPIESLDYEIFDSEIFNQDWRSRKKVQIFQYVVLKWVFALLIGLGTGLVGLFNNVAVENIAGFKLLLTTSLMSKQRFFEAFLVYAGLNMGLAAAAAALCAFIAPSAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIVGSIFGVSAGFVVGKEGPMVHTGACIASILGQGGSRKYGLTWSWLRYFKNDRDRRDMITCGAAAGVAAAFRSPVGGVLFALEEAASWWRSALLWRSFFTTAVVAIVLRGGIQFCSTGKCGLFGEGGLILYDVSSAKVTYNSGDIFAVIVLATIAGILGSIYNFLVDKVVRSYSIINEKGPFFKISLAITVSLLTSCCYYFLPWIANCLPCPTDGTIACPSVDESGEYKVFQCPPGYYNDLASLFLNTNDDAIRNLFSPKINKEFHISSLFIFFAAVYFLGIITYGIAVPSGLFIPVILAGAAYGRVIGRLFEPITKLDRGLFSLLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLALLISKSVADIFNKGVYDQILKIKGLPYLEAHAEPYMRNIATRDVVTGPLMSFSGIEMVGNILHVLNTTGHNGFPVIDEPPFSDSRELCGLVLRSYLLVLLKAKNFTRERVFADAGILENISVLDFGKAGSGKGVKLEDLDIGDEDLDMYVDLHPITNTSPYTVVETMSLAKAAIIFRQQGLRHMCVVPKSQERPPIVGILTRHDFMPEHVLGLYPDIKHHKWH 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03849 799 PRINTS Plant CLC chloride channel signature 88 96 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa1g03849 799 PRINTS Plant CLC chloride channel signature 455 471 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa1g03849 799 PRINTS Plant CLC chloride channel signature 299 307 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa1g03849 799 PRINTS Plant CLC chloride channel signature 313 323 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa1g03849 799 PRINTS Plant CLC chloride channel signature 331 338 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vifa1g03849 799 CDD ClC_6_like 83 604 - -
Vifa1g03849 799 Gene3D - 605 783 IPR046342 -
Vifa1g03849 799 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 44 787 - -
Vifa1g03849 799 FunFam Chloride channel ClC3 106 423 - -
Vifa1g03849 799 SUPERFAMILY CBS-domain pair 608 782 IPR046342 -
Vifa1g03849 799 Pfam CBS domain 733 781 IPR000644 -
Vifa1g03849 799 SUPERFAMILY Clc chloride channel 95 607 IPR014743 -
Vifa1g03849 799 PRINTS Chloride channel signature 535 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g03849 799 PRINTS Chloride channel signature 553 572 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g03849 799 PRINTS Chloride channel signature 183 200 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g03849 799 PRINTS Chloride channel signature 214 233 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g03849 799 PRINTS Chloride channel signature 503 523 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g03849 799 PRINTS Chloride channel signature 278 297 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g03849 799 PRINTS Chloride channel signature 591 605 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g03849 799 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g03849 799 Pfam Voltage gated chloride channel 171 585 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vifa1g03849 799 MobiDBLite consensus disorder prediction 11 30 - -
Vifa1g03849 799 CDD CBS_pair_voltage-gated_CLC_euk_bac 607 784 - -
Vifa1g03849 799 ProSiteProfiles CBS domain profile. 731 793 IPR000644 -
Vifa1g03849 799 Gene3D Clc chloride channel 106 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03849 Vifa-Chr1 593684696 593690015 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03849 22 797 Ion Channels AT5G49890 69.142 0.0 1075
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03849 K05016 - gmx:100809070 1229.54