Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03848 ATGGGAAGTTGCTGGAGTCGTCTTCCTCCTAACAACCGTCCAACTCCATCTCCAACCGGAACTGGAACATTTAATTCTCAAACAACAAGTGGAAGCTATGGTACTAGCACTACAACTTTCAATTCTATTTCTACTACTTCTTCTGGTAGTGGAAGTGGAAGCAGTAATAACATGTCCTCCTCCATAAACAGTACCAATTTCTCCTCATCTGATTTTTCAATCGGTGGTCAGATCTTATCTACTGCTAATCTAAGAGTCTACACTTTCGCCGAATTGAGAACTTCTACCAGGAATTTCAGACCTGATACAGTTCTTGGAGAAGGAGGTTTTGGAAAAGTCTTCAAAGGTTCGCTTGACGGAATCACCATTGCCGTCAAAAAATTGAACTCCGAAAGCTACCAAGGTCTCGAGGAATGGCAGTCTGAGATACATTTTCTAGGTCGACTTTACCATCCTAACCTTGTTAAACTGTTGGGATATTGTTATGAGGATACAGAGCTTCTTCTTGTTTATGAATACATGCAGAAGGGTAGTTTGGAAAATCACCTCTTTGGAAGGGGTGCTGAGATTCAACCACTTTCTTGGGAGCTGAGGCTTAAGATAGCAATTGGAGCAGCTAGTGGTCTTTCCTTCTTGCATACATCAAATAGAGAAATTATTTACAGAGATTTTAAGGCCTCTAATATATTGCTTGATGGGTCCTATAATGCAAAGATATCAGATTTTGGGCTTGCAAAGCTGGGTCCTTCAGCTAGTCAATCGCATTTGTCCACAACCGTGATGGGGACACCGGGTTATGCAGCTCCTGAATATATGCAAACAGGGCATCTATATGTAAAGAGTGATGTGTATGGTTTCGGAGTTGTTTTGGTTGAGATACTGACAGGCTTACGAGCGATTGATATCAACCGGCCAAGTGGGTTTCACAGTCTAACGGATTGGATCAAACCGCACCTACTGGACAAAAGAAAATTGAAGAAGAAAATGGATATTATGTTGGACGACAAGTATCCCATAAAAGCCGCACTTGCTATAGCTAAGGTTGCTTCAAGGTGTCTTGCACCTGAGCCCAAAATGCGCCCATCCATGAAGGAAGTTTTGGAGATCTTGAAAGGAACTCAAGCTTCTACTGACAAAACCGCTGAGGTTAGCGGTCAAGATTAA 1164 0.4218 MGSCWSRLPPNNRPTPSPTGTGTFNSQTTSGSYGTSTTTFNSISTTSSGSGSGSSNNMSSSINSTNFSSSDFSIGGQILSTANLRVYTFAELRTSTRNFRPDTVLGEGGFGKVFKGSLDGITIAVKKLNSESYQGLEEWQSEIHFLGRLYHPNLVKLLGYCYEDTELLLVYEYMQKGSLENHLFGRGAEIQPLSWELRLKIAIGAASGLSFLHTSNREIIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHLSTTVMGTPGYAAPEYMQTGHLYVKSDVYGFGVVLVEILTGLRAIDINRPSGFHSLTDWIKPHLLDKRKLKKKMDIMLDDKYPIKAALAIAKVASRCLAPEPKMRPSMKEVLEILKGTQASTDKTAEVSGQD 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03848 387 SUPERFAMILY Protein kinase-like (PK-like) 76 370 IPR011009 -
Vifa1g03848 387 FunFam receptor-like protein kinase FERONIA 58 173 - -
Vifa1g03848 387 Gene3D Phosphorylase Kinase; domain 1 74 173 - -
Vifa1g03848 387 Pfam Protein kinase domain 102 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03848 387 ProSitePatterns Protein kinases ATP-binding region signature. 105 127 IPR017441 GO:0005524
Vifa1g03848 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vifa1g03848 387 MobiDBLite consensus disorder prediction 17 37 - -
Vifa1g03848 387 PANTHER OS01G0588500 PROTEIN-RELATED 56 374 - -
Vifa1g03848 387 Gene3D Transferase(Phosphotransferase) domain 1 174 386 - -
Vifa1g03848 387 ProSiteProfiles Protein kinase domain profile. 99 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03848 387 CDD STKc_IRAK 105 372 - -
Vifa1g03848 387 MobiDBLite consensus disorder prediction 1 37 - -
Vifa1g03848 387 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 174 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03848 Vifa-Chr1 593678300 593679896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03848 44 370 Glycoside Hydrolase AT3G07070 43.976 7.95e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g03848 Pkinase 8.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03848 - - mtr:11430234 538.88