Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03847 ATGGGAAGTTGCTGGAGTCGTCTTCCTCCTAACAACCGTCCAACTCCATCTCCAACCGGAACTGTTACACCTGCAGGAACATTTAATTCTCAAACAACAAGTGGAAGCTATGGTACTAGCACTACAACTTTCAATTCTATTTCTACTACTTCTTCTGGTAGTGGAAGTGGAAGCAGTAATAACATGTCCTCCTCCATAAACAGTACCAATTTCTCCTCATCTGATTTTTCAATCGGTGGTCAGATCTTATCTACTGCTAATCTAAGAGTCTACACTTTCGCCGAATTGAGAACTTCTACCAGGAATTTCAGACCTGATACAGTTCTTGGAGAAGGAGGTTTTGGAAAAGTCTTCAAAGGTTCGCTTGACGGAATCACCATTGCCGTCAAAAAATTGAACTCCGAAAGCTACCAAGGTCTCGAGGAATGGCAGTCTGAGATACATTTTCTAGGTCGACTTTACCATCCTAACCTTGTTAAACTGTTGGGATATTGTTATGAGGATACAGAGCTTCTTCTTGTTTATGAATACATGCAGAAGGGTAGTTTGGAAAATCACCTCTTTGGAAGGGGTGCTGAGATTCAACCACTTTCTTGGGAGCTGAGGCTTAAGATAGCAATTGGAGCAGCTAGTGGTCTTTCCTTCTTGCATACATCAAATAGAGAAATTATTTACAGAGATTTTAAGGCCTCTAATATATTGCTTGATGGGTCCTATAATGCAAAGATATCAGATTTTGGGCTTGCAAAGCTGGGTCCTTCAGCTAGTCAATCGCATTTGTCCACAACCGTGATGGGGACACCGGGTTATGCAGCTCCTGAATATATGCAAACAGGGCATCTATATGTAAAGAGTGATGTGTATGGTTTCGGAGTTGTTTTGGTTGAGATACTGACAGGCTTACGAGCGATTGATATCAACCGGCCAAGTGGGTTTCACAGTCTAACGGATTGGATCAAACCGCACCTACTGGACAAAAGAAAATTGAAGAAGAAAATGGATATTATGTTGGACGACAAGTATCCCATAAAAGCCGCACTTGCTATAGCTAAGGTTGCTTCAAGGTGTCTTGCACCTGAGCCCAAAATGCGCCCATCCATGAAGGAAGTTTTGGAGATCTTGAAAGGAACTCAAGCTTCTACTGACAAAACCGCTGAGGTTAGCGGTCAAGATTAA 1176 0.4226 MGSCWSRLPPNNRPTPSPTGTVTPAGTFNSQTTSGSYGTSTTTFNSISTTSSGSGSGSSNNMSSSINSTNFSSSDFSIGGQILSTANLRVYTFAELRTSTRNFRPDTVLGEGGFGKVFKGSLDGITIAVKKLNSESYQGLEEWQSEIHFLGRLYHPNLVKLLGYCYEDTELLLVYEYMQKGSLENHLFGRGAEIQPLSWELRLKIAIGAASGLSFLHTSNREIIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHLSTTVMGTPGYAAPEYMQTGHLYVKSDVYGFGVVLVEILTGLRAIDINRPSGFHSLTDWIKPHLLDKRKLKKKMDIMLDDKYPIKAALAIAKVASRCLAPEPKMRPSMKEVLEILKGTQASTDKTAEVSGQD 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03847 391 SUPERFAMILY Protein kinase-like (PK-like) 80 374 IPR011009 -
Vifa1g03847 391 ProSiteProfiles Protein kinase domain profile. 103 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03847 391 MobiDBLite consensus disorder prediction 1 41 - -
Vifa1g03847 391 PANTHER OS01G0588500 PROTEIN-RELATED 60 378 - -
Vifa1g03847 391 CDD STKc_IRAK 109 376 - -
Vifa1g03847 391 Pfam Protein kinase domain 106 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03847 391 Gene3D Phosphorylase Kinase; domain 1 78 177 - -
Vifa1g03847 391 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 178 388 - -
Vifa1g03847 391 Gene3D Transferase(Phosphotransferase) domain 1 178 390 - -
Vifa1g03847 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Vifa1g03847 391 FunFam receptor-like protein kinase FERONIA 62 177 - -
Vifa1g03847 391 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Vifa1g03847 391 MobiDBLite consensus disorder prediction 18 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03847 Vifa-Chr1 593678300 593679896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03847 48 374 Glycoside Hydrolase AT3G07070 43.976 9.48e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g03847 Pkinase 8.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03847 - - mtr:11430234 548.895