Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03845 ATGTACAAAACACAAACCCTAATTTCAACCTCTCTCACTAACACGGCAACTCTTCTCGGTCGCCGCCGTATTCTCCACCGTCCCCATCTGAACGCCGCATCAGATCTTCCATTTGAGTACTTGAGTTCAAGATTTCCATCAGTCATGGCAACTAGACTTCAGTTTGAGAATAATTGTGATATTGGAGCTTTCTCTAAACTTACAAATGCTTATTGTATGGTTGCCATTGGAGGTTCTGAAGGCTTCTACAGTGTATTTGAATCTGAGCTATCTGGTGTTATCCCTGTGGTGAAGACATCTGTTGCTGGCACCCGCATTGTTGGTCGTCTTTGTGCTGGAAACAAGAATGGGCTTCTCTTGCCCCATACTACCACAGACCAAGAACTTCAACATTTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAAAGGATAGAAGAAAAACTATCTGCTCTGGGGAATTGTATTGCATGTAATGACCACGTGGCCCTCACTCACACCGATCTCGACAAGGAAACCGAGGAGATTATTGCAGATGTTCTTGGAGTAGAAGTCTTCAGGCAAACCATTGCTGGTAACATTCTTGTTGGTAGTTTCTGTGCTCTCTCAAATATAGGTGGTTTGGTCCACCCTCACACTTCCGTAGAAGACTTGGATGAACTTTCTACACTACTTCAAGTTCCTTTGGTTGCCGGAACTGTGAACCGAGGTAGTGAAGTGATAGGTGCTGGAATGATAGTTAATGATTGGACAGCATTTTGTGGTTCAGATACTACAGCAACAGAGCTTTCTGTAATTGAGGATGTTTTCAAGCTGAGAGACTCGGACCCTAGTGTCGACAAGAGGAAATCCCTCATTGACAGCTATGTTTGA 873 0.4376 MYKTQTLISTSLTNTATLLGRRRILHRPHLNAASDLPFEYLSSRFPSVMATRLQFENNCDIGAFSKLTNAYCMVAIGGSEGFYSVFESELSGVIPVVKTSVAGTRIVGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEEKLSALGNCIACNDHVALTHTDLDKETEEIIADVLGVEVFRQTIAGNILVGSFCALSNIGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIGAGMIVNDWTAFCGSDTTATELSVIEDVFKLRDSDPSVDKRKSLIDSYV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03845 290 SUPERFAMILY Pentein 49 272 - -
Vifa1g03845 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 49 289 IPR002769 GO:0042256|GO:0043022
Vifa1g03845 290 SMART eIF6neu2 51 252 IPR002769 GO:0042256|GO:0043022
Vifa1g03845 290 Pfam eIF-6 family 52 251 IPR002769 GO:0042256|GO:0043022
Vifa1g03845 290 CDD IF6 50 271 IPR002769 GO:0042256|GO:0043022
Vifa1g03845 290 Hamap Translation initiation factor 6 [eif6]. 38 290 IPR002769 GO:0042256|GO:0043022
Vifa1g03845 290 Gene3D - 49 273 - -
Vifa1g03845 290 FunFam Eukaryotic translation initiation factor 6 49 273 - -
Vifa1g03845 290 NCBIfam translation initiation factor IF-6 52 272 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03845 Vifa-Chr1 593533884 593537628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03845 49 290 Eukaryotic Initiation Factors Gene Family AT3G55620 85.714 4.00e-158 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03845 K03264 - gmx:100800352 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03845 1 593533884 593537628 Vifa3g01677 3 432522574 432524789 PCT