Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03841 ATGGAATATGGTGGTGGGATAGTGGACGACGGTGGTGTATTTGGGACGATGGTTGGAGGAGATCAAGGAGATATAATTGAGGAGCTTTTAGGAGAAGGTTGCTGGATTGAAGCTAGTGAGAATAACATGATGGGGATGCAGCAAACTGCATCGCCACAGCAACAACACTACATGGCGAGTAATATTCCCATTGGAATGGGAGAAGGTGATCATTTTAATCATCATCAAGTTGATCAGGAAAGTGGTTTTGTTGTTGGGAAGAGATGGTGGATCGGGCCGAGGGCGAGTCAAGGCCCATCGACATCAGTGAAAGAGAGACTAGTAGTTGCTGTTGGTTACTTAAAAGAGTATACAAAGAACTCTTCCAACAACGTTCTTATTCAGATATGGGTGCCAGCTCTAAGAAGAAGATCAGCAATTCATTATCTGCAGCAGGAGTCGAGTTCATCTGCTCCGGTTTCTGTGAATCCAAACATGAATGTTCATGTTAGATTCTTTAGAAGCCACGAGTATCCACGGCATCCGCAGCAGCAGCAGCAGCAGTATGGATCTCTTCTAGCACTTCCTGTGTTTGAAAGAGGAAGCGGGACATGCCTTGGTGTTATTGAGTTTGTTATCGCGAATCAAAACCTTATAAATTACCGTCCACAGCTTGATCATCTCTCCAATGCTCTCGAGGCTGTTGATTTTAGAACTAGTCACAACATGAATATTCCACCAGCAGTAAAGGTATTTGAGGAATTGTACGAAGCAGCGGTGAACGAGATCATAGAGGTGTTGGCATCAGTATGTAAGACTCACAATTTGCCATTAGCACTAACATGGGCTCCTTGCATACAACAACAAGGAGGAGGAAAAGGTACTACCGGTGGTGGTGGATGCAGTGTTTCAGTTACAGTTCCAACGGATCAGATGAACAATAATAATCATATGATGATGAGTTGCATATCGACAGTTGATTCAGCTTGTTACGTTGGTGACATGGAGGTGTTAGGATTCCAAGAAGCTTGCAGTGAGTATCATCTTTTCAATGGACAAGGAATAGTAGGAACAGCATTTACAACAACCAAACCTTGTTTCGCGATAGACATTACAGCATTCAGCAAAGCCGAATACCCGCTTGCTCACCATGCGAACATGTTTGGATTACACGCCGCGGTTGCAATTCCATTAAGAAGTGTGTACACTGGCTCTGCAGCTGATTTTGTTTTGGAGTTTTTTCTACCTAAAGATTGTCGCGACACGGAACAACAGAAACAAATGCTGAACTCATTATCCCTTGTTGTTCAACAAGCTTGCAGAAGCTTGCATTTGCATGTTGTTATGGATGATGACAATGCTAATCATCATGAAGATCAAGATCAGTTCACTTTTCCAACAACAACAAATAACTACATGCCTTCTTCTGCTTCTGATGCTGCTACTACTGCATCACTGTCACAAGTTGATGCAGCTTCAGGCTGTTCAACTAAAGACACAAATTCATCATCTTGTTCTTGGATTGCACATATGATGGAAGCACAAAACAAAGGGAAAGGCGTGTCGGTGTCGTTGGAATATCTTCAAGAGCCTAAAGAGGAATTCAAAGTCACAACATGTAACTGGGAAAGAGAGGGAAATTCAGTGTTTTCAGAATTTGGCCAAGTACTGCAGCATGATCAGAGCAGTAACTCAAGAGCAAGTGTAGAAGCTGGTGAAGAATCTGGAGGGGGCGGTACCGGTGGTGGTCGCAGGTCATCTTCTTCTTCGAGTGGACGAAAGTCAGGCGACAAGCGACGGACCAAGGCGGAGAAGACCATAAGCTTGCCTGTTTTAAGACAATACTTCGCCGGAAGCCTAAAAGACGCCGCAAAGAGCATCGGTGTATGTCCTACAACTCTGAAAAGGATATGCAGACAGCATGGGATAACAAGATGGCCTTCAAGAAAAATAAAGAAAGTGGGCCATTCTTTGAAGAAGCTTCAACTGGTGATAGATTCTGTTCAAGGTGCAGAAGGTGCTATTCAGATTGGATCTTTCTATGCAAGCTTTCCAGAGTTGAGCACTGCAGCTGCTCACGGTGGTGGCGGTGGTGGTGGTGGCGGTGGTGGTGATCATATCAACAACAACAGTTTCTATAACAGCCATGGAGATTTAGTTACTAATTTGAAATCTCCACCTTCTGCATGTAGTCAGACTCATGCAGCAGGAAACAAATCTATTATTAATGGAGATCATCATCATCATCATCTTGTGATGACAGAAAATCTTGCAGCTCCTTCAGTTGATGCATTAATGCAACATGCATCCACTATTAATATCCAAGACTATCAACAACTACAAGAGGATCATGATACTAAACAGTTACTTCTACATTTCAACAACAACAACAACCAAACCCTACCTCCAAGACCAACTGTAACCTGGAACAACAACAATTCATCATCATCAGGACTATTGGAAAGAGGTGCTTTCAGAGTGAAGGCGACGTTCGCGGACGAGAAGATTAGGTTTAGCTTGCAAGCAGTGTGGTGTTTTAGAGATCTGCAGCTTGAGATAGCAAGGCGTTTTAACCTAAATGATATGAACAATTTGGTTCTAAAGTATTTGGATGATGAAGGAGAATGGGTTGTGTTAGCATGTGATAGTGATCTTGAAGAGTGTAAAGACTTGCATACATCATCTCACACAAGAACCATAAGACTCTCACTTTTTCAAGCTTCTCCTTTGAATAATCTTGCAAACACCTTCCGCAACAACAGTAGCAGTCCATCTTCCTAG 2760 0.4297 MEYGGGIVDDGGVFGTMVGGDQGDIIEELLGEGCWIEASENNMMGMQQTASPQQQHYMASNIPIGMGEGDHFNHHQVDQESGFVVGKRWWIGPRASQGPSTSVKERLVVAVGYLKEYTKNSSNNVLIQIWVPALRRRSAIHYLQQESSSSAPVSVNPNMNVHVRFFRSHEYPRHPQQQQQQYGSLLALPVFERGSGTCLGVIEFVIANQNLINYRPQLDHLSNALEAVDFRTSHNMNIPPAVKVFEELYEAAVNEIIEVLASVCKTHNLPLALTWAPCIQQQGGGKGTTGGGGCSVSVTVPTDQMNNNNHMMMSCISTVDSACYVGDMEVLGFQEACSEYHLFNGQGIVGTAFTTTKPCFAIDITAFSKAEYPLAHHANMFGLHAAVAIPLRSVYTGSAADFVLEFFLPKDCRDTEQQKQMLNSLSLVVQQACRSLHLHVVMDDDNANHHEDQDQFTFPTTTNNYMPSSASDAATTASLSQVDAASGCSTKDTNSSSCSWIAHMMEAQNKGKGVSVSLEYLQEPKEEFKVTTCNWEREGNSVFSEFGQVLQHDQSSNSRASVEAGEESGGGGTGGGRRSSSSSSGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSTAAAHGGGGGGGGGGGDHINNNSFYNSHGDLVTNLKSPPSACSQTHAAGNKSIINGDHHHHHLVMTENLAAPSVDALMQHASTINIQDYQQLQEDHDTKQLLLHFNNNNNQTLPPRPTVTWNNNNSSSSGLLERGAFRVKATFADEKIRFSLQAVWCFRDLQLEIARRFNLNDMNNLVLKYLDDEGEWVVLACDSDLEECKDLHTSSHTRTIRLSLFQASPLNNLANTFRNNSSSPSS 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03841 919 MobiDBLite consensus disorder prediction 553 597 - -
Vifa1g03841 919 PANTHER PROTEIN NLP8 74 911 IPR045012 GO:0003700
Vifa1g03841 919 SUPERFAMILY CAD & PB1 domains 806 902 - -
Vifa1g03841 919 CDD PB1_NLP 818 899 IPR034891 -
Vifa1g03841 919 ProSiteProfiles RWP-RK domain profile. 586 667 IPR003035 -
Vifa1g03841 919 ProSiteProfiles PB1 domain profile. 817 900 IPR000270 GO:0005515
Vifa1g03841 919 Pfam RWP-RK domain 600 647 IPR003035 -
Vifa1g03841 919 Gene3D - 816 902 - -
Vifa1g03841 919 Pfam PB1 domain 818 899 IPR000270 GO:0005515
Vifa1g03841 919 SMART PB1_new 817 900 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03841 Vifa-Chr1 592808772 592811852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03841 24 901 NLP Transcription Factor Family AT4G35270 39.959 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vifa1g03841 PB1 3e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03841 - - tpra:123881749 1451.8