Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03839 ATGAGAGAAGAAGATAATTCCTCCGATCATAGTAGTGCCGAATTCATCATGAAAGATCACCACCATCAACATCAACCTCCATCTTCTTCTTCTGTTCCCGGAAAAAAGAGAAAAGAAACCGAATCATCATCATCAGGTATCATCAACAACGACAACAACAACAACACTCCTCGTGCTTGTACTGAATGCGGCAAGAAATTCTGGTCATGGAAAGCTCTTTTCGGTCACATGCGCTGTCATCCTGAACGTCAATGGCGCGGTATCAATCCTCCTCCAAATTTCCGACGACACCAACAACAGCATTATCGACAACAACCGCATACTCACAGTCACAGTCACAGTTACGGTACTACTTCTTCCATGACGCCGGAAGATCACGAAGTTGCTGCTTGTTTGCTTTTACTTGCAAATTCAAATTCGAAGATGAACAACAACAGTATCAACAAAACGGCGAAGCTTAAGGCGGTTGCGGCGGTTACTACGGTTGCTACTACGGTGGATGATTCATCTTCGGTTATGGATCAAGAGAATAATAATAATAATGCTCATTTTGTGTGTTCGTGTTGTAACAAGGTGTTTGGATCGCATCAGGCTCTTGGAGGACACAGAGCAAGTCACAAGAATGTGAAAGGCTGTTTCGCCAATACAACAACTTCTTCACCACCACCACCAACAACAACAACAACAGTAACCGCTTCCGGTAGTAGGATGCTGACGTGGACACAACAAACTCAAGGCGGAGGAGGAGATCATGCTTTTGTTAGTGGTGGCGATCATGACGAAGATAACCACCACCAGGCGATGATGAATTTGATGACGGTGCCGCGTGACGGTTACAATGCTGACGTGGAAGGGGAAACGGTTATTGAGAGTAGTGGAGGAGGGGGAGGACATAAGTGTGGTATATGTTTGAGGGTATTTACAACTGGACAAGCACTTGGTGGACATAAGAGGTGTCATTTTGATTCATCTAATTCCATTGCTGCAACGACTTCTAACAAATCATCATCATCTCTTAATGTTGATTTGAATTTCCCTTTTCCACCTCCTGATGATGCTGATCCTCCTCTCACTCTTGATTTAAAGTTAGGACTTTGA 1098 0.4408 MREEDNSSDHSSAEFIMKDHHHQHQPPSSSSVPGKKRKETESSSSGIINNDNNNNTPRACTECGKKFWSWKALFGHMRCHPERQWRGINPPPNFRRHQQQHYRQQPHTHSHSHSYGTTSSMTPEDHEVAACLLLLANSNSKMNNNSINKTAKLKAVAAVTTVATTVDDSSSVMDQENNNNNAHFVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTTSSPPPPTTTTTVTASGSRMLTWTQQTQGGGGDHAFVSGGDHDEDNHHQAMMNLMTVPRDGYNADVEGETVIESSGGGGGHKCGICLRVFTTGQALGGHKRCHFDSSNSIAATTSNKSSSSLNVDLNFPFPPPDDADPPLTLDLKLGL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03839 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Vifa1g03839 365 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 24 364 - -
Vifa1g03839 365 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Vifa1g03839 365 MobiDBLite consensus disorder prediction 87 122 - -
Vifa1g03839 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 298 325 IPR013087 -
Vifa1g03839 365 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vifa1g03839 365 MobiDBLite consensus disorder prediction 1 56 - -
Vifa1g03839 365 SMART c2h2final6 184 206 IPR013087 -
Vifa1g03839 365 SMART c2h2final6 298 320 IPR013087 -
Vifa1g03839 365 SMART c2h2final6 58 80 IPR013087 -
Vifa1g03839 365 Pfam C2H2-type zinc finger 183 207 - -
Vifa1g03839 365 Pfam C2H2-type zinc finger 298 320 - -
Vifa1g03839 365 Pfam C2H2-type zinc finger 60 82 - -
Vifa1g03839 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Vifa1g03839 365 SUPERFAMILY beta-beta-alpha zinc fingers 55 83 IPR036236 -
Vifa1g03839 365 ProSitePatterns Zinc finger C2H2 type domain signature. 300 320 IPR013087 -
Vifa1g03839 365 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g03839 365 MobiDBLite consensus disorder prediction 331 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03839 Vifa-Chr1 591804806 591805903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03839 58 365 C2H2 Transcription Factor Family AT4G35280 39.103 1.44e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g03839 zf-C2H2_6 6.8e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03839 - - psat:127120980 442.965