Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03826 ATGGGTTGTTGCCAATCCTCTTTGTTCACAAGAGTAAAAGAAACCGAAACCGAAAAACAACCACAACAGCAACCACAACCCTATCAGCAATTTCACAGCAGTAACAACAACAACAACACCGTGAACGAAACGGAGAAGGATTTTTCAGATCCTTCTTCGTTTACGTTCTCGGAATTTTCACTCTCCGACTTGAAATCAGCTACGAATAATTTCAGTTCGGAGTATATAGTTTCCGAGAGCGGCGAAAAGGCGCCGAACTTGGTTTATAAAGGTAGGTTACAGAATCAGAAGCGGTGGATTGCGGTTAAGAAGTTCAGTAAAGCTGCTTGGCCGGATCCGAAGCAGTTCGTTGAAGAAGCTTCTGGTGTTGGGAAATTGCGTCATCCTAGGCTTGCTAATTTGATCGGTTATTGTTGTGATGGTGATGAGAGGTTGCTCGTTGCTGAGTTTATGCCTAATGATACTCTCGCTAAACACCTTTTTCACTGGGAAAATCAGACGATTGAGTGGGCCATGCGGTTGAGAGTTGCTCTTTATATTGCACAAGCTTTGCATTATTGTACTTCTGAGGGTCGTCCTTTGTATCATGATTTGAATGCTTATCGTGTTCTTTTCGATGAGGAAGGTGATCCGCGACTTTCTTGTTTTGGTTTAATGAAGAACAGTAGGGATGGAAAAAGTTATAGCACAAATCTTGCTTATACACCTCCTGAGTATTTAAGAAATGGAAGGGTTACCCCTGAAAGTGTAATTTACAGCTTTGGAACTGTTCTTCTTGACCTACTGAGTGGAAAGCACATCCCTCCCAGTCATGCACTTGATATGATACAGGGTAAAAACAACATGCTCTTGATGGATTCTCATTTGGAGGGAAAATTTTCTACAGAGGAGGCAACAGTAGTGGTCAATCTTGCCTCTAAATGTTTGCAATATGAACCGCGAGAGCGGCCTAATACAAAGGATTTGGTCACAACACTTGCTCCATTGCACACTAAACCCGATGTTCGTTCTCATATCATGCTTGGAATTCCAAAGCAAGAGGAAGCTCCATCTACCCCCCAACGTCCTCTTTCTGCAATGGGTGAGGCTTGCTCAAGAATGGACCTCACTGCAATACATCAGATCTTAGTTGCAACGCACTACAGAGATGATGAAGGGACTAACGAGTTGTCGTTCCAAGAGTGGACTCAACAGATGAGAGATATGCTCGAGGCAAGGAAACGTGGGGACTATGCATTCCGTGATAAGGATTTTAAGACAGCTATTGATAACTATTCCCAGTTCATTGATGTGGGGACGATGGTCTCACCCACAGTTTTTGCAAGGCGAAGCCTATGCTATCTGTTATGTGATCAACCAGATCCTGCTCTACGAGATGCAATGCAAGCACAATGTGTTTATCCAGACTGGCCCACGACTTTCTACATTCAGTCAGTTGCTCTTGCAAAGCTGAACATGCACAAGGATGCAGCTGACATGTTAAACGAGGCAGCTGCATTGGAAGAGAAGAAGCAACGAGGAGCGAAAGGATCATAG 1536 0.4382 MGCCQSSLFTRVKETETEKQPQQQPQPYQQFHSSNNNNNTVNETEKDFSDPSSFTFSEFSLSDLKSATNNFSSEYIVSESGEKAPNLVYKGRLQNQKRWIAVKKFSKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEFMPNDTLAKHLFHWENQTIEWAMRLRVALYIAQALHYCTSEGRPLYHDLNAYRVLFDEEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPNTKDLVTTLAPLHTKPDVRSHIMLGIPKQEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTTFYIQSVALAKLNMHKDAADMLNEAAALEEKKQRGAKGS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03826 511 SUPERFAMILY Protein kinase-like (PK-like) 49 330 IPR011009 -
Vifa1g03826 511 MobiDBLite consensus disorder prediction 19 49 - -
Vifa1g03826 511 ProSiteProfiles Protein kinase domain profile. 74 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03826 511 MobiDBLite consensus disorder prediction 12 49 - -
Vifa1g03826 511 Gene3D Phosphorylase Kinase; domain 1 45 150 - -
Vifa1g03826 511 Pfam Protein tyrosine and serine/threonine kinase 88 326 IPR001245 GO:0004672|GO:0006468
Vifa1g03826 511 FunFam probable serine/threonine-protein kinase At4g35230 400 509 - -
Vifa1g03826 511 Gene3D Tetratricopeptide repeat domain 400 510 IPR011990 GO:0005515
Vifa1g03826 511 SUPERFAMILY TPR-like 403 505 IPR011990 GO:0005515
Vifa1g03826 511 Coils Coil 483 503 - -
Vifa1g03826 511 Gene3D Transferase(Phosphotransferase) domain 1 152 343 - -
Vifa1g03826 511 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 25 506 IPR045845 GO:0004672|GO:0009742
Vifa1g03826 511 FunFam probable serine/threonine-protein kinase At4g35230 46 150 - -
Vifa1g03826 511 FunFam probable serine/threonine-protein kinase At5g41260 152 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03826 Vifa-Chr1 589164906 589173467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03826 37 334 Glycoside Hydrolase AT3G07070 35.185 2.79e-48 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vifa1g03826 PK_Tyr_Ser-Thr 3.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03826 K14500 - gmx:100808907 911.368