Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03818 ATGGAGATGCAACAGCTTCTTTCCATGGGTTTTCCCGACGAGTTAGCCGCCCAAGCCTTAGCTGCCACCGGCGGTAAATCCACCGTCAAAGCAACCGAATGGATTCTCACTCACAAACCTACCTCCACCACCACCACCACCACCAACAACAACCCTTCCCCATCACCATCACCACCACCACCACCTTCATCATTCGCATTCCAACCCAAACTCGACCGTTTCTTCCAAAACCCAAATCCATCTCCACCACAACCCATTGATTCACAACAACAACAACAAGAAGAACAAGAAACCGAAACAAATGAACCAACCAAACGTATAAAGCTATCGCCAACACCGCTCTCACAGACACAATCTCAAACACCTACACTGCAAAACAACAAACCCTCATTTTTCTTCAACCGTTCCAAGAAACAAACTCAAACTCAAACCCACACTCATGAACCCTTATACGAACGTTTACGTCCCAGAACATTGGACGATGTTGTCGGGCAGGACCATCTTCTATCAGCAAATTCCATTCTCCGTTCCGCAATCCAACGCAACCGTTTACCTTCTATCCTCTTATGGGGTCCACCTGGCACAGGTAAAACCACTATTGCCAAAGCTATTGTCAATTCTTCAACAACAACTTCAACTTTCTATCGTTTTGTCTCTTTATCTGCTGTTACTAGTGGTGTTAAAGATGTTAGAGAAGCTGTTGATGAAGCAAGAAAACTCAGACTCAAAACAAATCAAACTACTGTTCTTTTTGTGGATGAGGTTCATAGGTTTAATAAATCTCAACAAGATTCTTTCTTACCTGTTATTGAAGATGGTAGCATTGTTTTCGTTGGTGCTACTACTGAAAACCCTTCTTTTCATTTGATTACACCCCTTTTGTCGCGTTGTCGCGTCCTTACTCTTAATCCTCTTCAACCCCATCACCTTGGTTTGCTTCTTAAGCGCGCTGTTAGTGATAGAGATAAAGGGTTGGTGAAAAGTCTCGGTTTTGATTCTGGTTCTGGTTCTTCCAATGTTGATGTTAGTGTTGGTGAAGATGTGGTTGATTTTATTGGTAATAATTGTGACGGGGATGCTCGTGTTGCTTTGAATGTATTGGAGATTGCTTCAGTTACTGCAGCTACTCGAGTACAACAGGGTAATGAAGAATGCCAGGATGCTGTTGTTGTTGCTGTTAGTGTAGAGGATGCGAAGGAGGCACTTCAAAGCAAACATCTTGCATATGATAAAGCCGGGGAAGAACACTATAATTTGATCAGTGCATTGCACAAGTCTATGAGGGGAAGTGATGCTGATGCAGCGATTTATTGGTTGGCAAGAATGTTGAAAGGAGGTGAAGAACCACTTTATATTGCACGTAGGCTTGTACGGTTTGCAAGTGAGGATGTTGGTTTGGCTGATCCTTTAGCTCTCAATCAAGCTGTTTCTTGCTACCAAGCTTGTCATTTTATAGGAATGCCAGAGTGCAATGTGATTCTTGCACAATGTGTTGCTTACTTGGCTTTGGCTCCCAAGTCTATAGCGGTTTATAGAGCGATTGGAGATGCTGAGAAGGTAGTGAAGGAATCAGTTGGACAGAATGAAGGGGTGCCTCTTCATCTCAGGAATGCACCGACCAAGTTAATGAAGGAAGTTGGGTATGGGAAGGGATACATATACACTCCTGATAACCCTTCTGCAACCCAGAGCTTTTTGCCACCCTCCCTTCAAGGGTTCAAATTCCTCCATTGGCCTGACAGGAATCCTTCTAAATCTGACGGATGA 1767 0.4375 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPTSTTTTTTNNNPSPSPSPPPPPSSFAFQPKLDRFFQNPNPSPPQPIDSQQQQQEEQETETNEPTKRIKLSPTPLSQTQSQTPTLQNNKPSFFFNRSKKQTQTQTHTHEPLYERLRPRTLDDVVGQDHLLSANSILRSAIQRNRLPSILLWGPPGTGKTTIAKAIVNSSTTTSTFYRFVSLSAVTSGVKDVREAVDEARKLRLKTNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLGLLLKRAVSDRDKGLVKSLGFDSGSGSSNVDVSVGEDVVDFIGNNCDGDARVALNVLEIASVTAATRVQQGNEECQDAVVVAVSVEDAKEALQSKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLKGGEEPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSIAVYRAIGDAEKVVKESVGQNEGVPLHLRNAPTKLMKEVGYGKGYIYTPDNPSATQSFLPPSLQGFKFLHWPDRNPSKSDG 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03818 588 MobiDBLite consensus disorder prediction 23 129 - -
Vifa1g03818 588 MobiDBLite consensus disorder prediction 34 51 - -
Vifa1g03818 588 CDD HLD_clamp_RarA 305 403 - -
Vifa1g03818 588 Gene3D - 2 53 - -
Vifa1g03818 588 FunFam AAA-type ATPase family protein 305 388 - -
Vifa1g03818 588 CDD AAA 163 298 - -
Vifa1g03818 588 Gene3D - 136 303 IPR027417 -
Vifa1g03818 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 385 IPR027417 -
Vifa1g03818 588 FunFam Putative AAA family ATPase 403 506 - -
Vifa1g03818 588 Gene3D - 507 586 - -
Vifa1g03818 588 PRINTS CbxX/CfqX superfamily signature 237 256 IPR000641 GO:0005524
Vifa1g03818 588 PRINTS CbxX/CfqX superfamily signature 359 371 IPR000641 GO:0005524
Vifa1g03818 588 PRINTS CbxX/CfqX superfamily signature 186 201 IPR000641 GO:0005524
Vifa1g03818 588 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Vifa1g03818 588 Gene3D - 305 393 - -
Vifa1g03818 588 SUPERFAMILY UBA-like 3 41 IPR009060 GO:0005515
Vifa1g03818 588 SMART AAA_5 183 305 IPR003593 GO:0016887
Vifa1g03818 588 Pfam MgsA AAA+ ATPase C terminal 429 579 IPR021886 -
Vifa1g03818 588 FunFam Replication-associated recombination protein A 138 304 - -
Vifa1g03818 588 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 584 - -
Vifa1g03818 588 Pfam UBA/TS-N domain 4 35 IPR015940 -
Vifa1g03818 588 Pfam ATPase family associated with various cellular activities (AAA) 187 299 IPR003959 GO:0005524|GO:0016887
Vifa1g03818 588 SUPERFAMILY post-AAA+ oligomerization domain-like 413 582 IPR008921 GO:0003677|GO:0006260
Vifa1g03818 588 MobiDBLite consensus disorder prediction 105 129 - -
Vifa1g03818 588 Gene3D - 403 506 - -
Vifa1g03818 588 MobiDBLite consensus disorder prediction 52 66 - -
Vifa1g03818 588 Pfam AAA C-terminal domain 341 428 IPR032423 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03818 Vifa-Chr1 588175422 588177188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03818 149 429 Core DNA Replication Machinery Family AT1G77470 24.126 1.37e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03818 K07478 - gmx:100799257 816.994