Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03808 ATGGCTACACAAGCTCTAGTGTCGTCATCATCTCTTACTTTTGCAGCCGAGGCTGTGAGACAGAGTTTTGGAGCAAGATCACTTCCTTCATCAGTTGGATGTTCTAGAAAAGGTTCCTTTCTTGTCAAGGCAGCTGCTACTCCTCCTGTCAAGCAAGGTGGAGTTGATAGACCATTGTGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGAAGCCTACCAGGTGACTATGGATTTGATCCTCTAGGACTATCAGACCCAGAAGGAACAGGAGGTTTCATCGAGCCAAGATGGCTAGCATACGGTGAGGTAATCAACGGTCGCTTTGCAATGTTGGGAGCAGTCGGAGCAATAGCGCCTGAAATACTCGGAAAAGCTGGTTTAATCCCCCAGGAAACCGCCCTTGCTTGGTTCCAAACCGGCGTGATCCCACCTGCAGGAACATACAGCTACTGGGCAGACAATTACACACTCTTCGTCTTGGAAATGTCACTCATGGGATTCGCGGAACACAGAAGATTCCAAGATTGGGCCAAACCTGGCTCCATGGGAAAACAGTACTTCTTAGGGCTTGAAAAAGGTCTTGGAGGCTCTGGTAATCCTGCTTACCCTGGTGGACCTTTCTTTAACCCTCTCGGTTTCGGTAAAGACGAGAAGTCTTTGAAGGAGTTGAAGCTTAAGGAAGTGAAAAATGGAAGGTTAGCTATGTTGGCAATATTGGGGTACTTCATTCAAGGTCTTGTTACAGGAGTTGGACCATACCAAAACTTGTTAGATCATTTGGCTGATCCTGTCAACAACAATGTCTTGACAAGTCTCAAGTTTCATTGA 834 0.4628 MATQALVSSSSLTFAAEAVRQSFGARSLPSSVGCSRKGSFLVKAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYSYWADNYTLFVLEMSLMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03808 277 Gene3D Chlorophyll a/b binding protein domain 59 276 - -
Vifa1g03808 277 Pfam Chlorophyll A-B binding protein 68 246 IPR022796 -
Vifa1g03808 277 SUPERFAMILY Chlorophyll a-b binding protein 55 273 - -
Vifa1g03808 277 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 7 272 IPR001344 GO:0009765|GO:0016020
Vifa1g03808 277 FunFam Chlorophyll a-b binding protein, chloroplastic 58 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03808 Vifa-Chr1 586996762 586997996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03808 1 277 Chloroplast and Mitochondria Gene Families AT1G61520 86.643 3.56e-169 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03808 K08909 - gmx:100784090 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g03808 1 586996762 586997996 Vifa1g03808 1 586996762 586997996 ECH