Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03806 ATGACAACAATTAATCCACAGAATCACTCGAACTTGATTATTGACTCAGTCACAGACCCTTTGAACTGGAATTCAGCTGCAAATTCACTCAAGGGTAGCCACTACGATGAAGTGAAACGCATGGTGGCAGAGTACAAGAAACCAGTTATCTGTCTTGAGTCTGCAAGAGCTGGCGTTGAAGCCAGCTGCGAGTGGATCGCGGAAAACATTGAAAAAGGCACTGCCATTTATGGTGTTACCACTGGCTTTGGTGCTGCCTCTCATAGACGAACTCAACAAGGCTTAGCTCTTCAGAAGGAGATGGTTAGGTTTCTAAACTGTGCAATATTTGGGCGTGAAACTGAGTTGTCTCATACATTACCTCAGTCAGCAACAAAAGCAGCTATGCTTGTGAGGGTTAATACCCTTCTTCAAGGCTATTCAGGCATTAGATTTGAAATCTTAGAAGCTATTACCAAACTGCTCAACAATAATGTCACACCAGTCTTGCCATTACGCGGTACAGTTACTGCTTCCGGTGATCTAATTCCTCTGTCCTACATCGCTGCATTGCTAACTGGTAGGCGAAATTCCAGAGCTGTTGGACCTTCAAAAGAGTCCCTTAATGCCAAGGAAGCTTTCCATTTAGCGGGGTTGAGTTCTGGTTTCTTCGAGTTGAAGCCGAAAGAAGGCCTCGCTCTTGTAAATGGTACAGCTGTTGGATCTGGTGTCGCTTCTACGGTGCTTTTTGAGGCAAACATATTAGCTTTGTTGTCGGTCGTTCTAACTGCGGTTTTTACTGAAGTCATGCAAGGGAAGCCGGAGTTTACACATCATCTTATACACAAACTGAAGTTTCATCCGGGTCAAATCGAAGCAGCTGCTATTATGGAACACATTTTAGACGGAAGCTCTTATATCAAAAACGCAAAACTGCAGCAGCCAGATCCATTGCAGAAGCCTAAAAAAGATCGCTACGCTCTTGTAACTTCTCCACAGTGGCTTGGTCCACAAATTGAAGTCATCCGGTTTTCGACAAAATCAATTGAAAGGGAGATAAATTCAGTGAATGACAATCCTCTGATTGATGTCACAACGGATCAGGCACTGAATGGTGGTAATTTCCAAGGCACGCCAATTGGAGTTTCGATGGACAACGTACGTCTAGCTATTGCTTCAATTGGAAAACTCATTTTTGCGCAGTTTACTGAGCTAGTCAATGACTTGTACAATAATGGGTTGCCATCAAATCTTTCTGCGGGTAGAAACCCGAGTCTTGATTACGGTTTTAAGGCTTCTGAAGTTGCCATGGCTGCTTATTGTTCTGAACTTCAATATTTAGCAAATCCTGTAACAAGCCATGTGCAAAGTGCTGAGCAGCATAACCAGGATGTGAACTCTTTGGGGTTGATTTCTGCTTTGAAAACTGTGGAAGCCATTGAGTTATTGAAGCTCATGTCTTCCACATACTTGGTTGCACTCTGTCAAGCTATTGACTTGAGGCATTTGGAGGAAATTCTTAAGAACAGTATCAAAAATACTGTAAGCAGAGTTGCAAAGAAGACACTAATCATAGATGACAAAGAAGAAATTAATCCATTCACAAACTGTGAGGAAAATTTGCTCAAAGTGATTGATAGAGAATATGTATTCTCCTACATAGACGATCCCTTTAATGTTGCGTACCCGTTGATGCTGAAACTAAAGCAAGTACTTTATGAGCACGCGCATATCAGTGCCGTTAATGATAAGAATGTGAGCTTGTCGATATTTGAGAAGATAGGAGCTTTTGAGGAAGAATTGAAGTCTCTGTTGCCGAAGGAAGTTGAAAATGCAAGAGTCGCATTCGAGAAGGGAAATTCAGAAATTCCAAACAGAATTAAGGAATGTAGGTCATACCCGTTATACAAGTTTGTGAGGGAAGAATTAGGGATAGGGCTGCTGACAGGAGAAAAGGATGTCACACCAGATGAGGAATTTGAGAAAGTGTTTACAGCAATGTGTCAAGCAAAGATTGTTGATCCAGTTTTGGAATGTCTTGGTGATTGGAAAGGAGTTCCAATTCCAATATAA 2052 0.4191 MTTINPQNHSNLIIDSVTDPLNWNSAANSLKGSHYDEVKRMVAEYKKPVICLESARAGVEASCEWIAENIEKGTAIYGVTTGFGAASHRRTQQGLALQKEMVRFLNCAIFGRETELSHTLPQSATKAAMLVRVNTLLQGYSGIRFEILEAITKLLNNNVTPVLPLRGTVTASGDLIPLSYIAALLTGRRNSRAVGPSKESLNAKEAFHLAGLSSGFFELKPKEGLALVNGTAVGSGVASTVLFEANILALLSVVLTAVFTEVMQGKPEFTHHLIHKLKFHPGQIEAAAIMEHILDGSSYIKNAKLQQPDPLQKPKKDRYALVTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVTTDQALNGGNFQGTPIGVSMDNVRLAIASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAIELLKLMSSTYLVALCQAIDLRHLEEILKNSIKNTVSRVAKKTLIIDDKEEINPFTNCEENLLKVIDREYVFSYIDDPFNVAYPLMLKLKQVLYEHAHISAVNDKNVSLSIFEKIGAFEEELKSLLPKEVENARVAFEKGNSEIPNRIKECRSYPLYKFVREELGIGLLTGEKDVTPDEEFEKVFTAMCQAKIVDPVLECLGDWKGVPIPI 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03806 683 Gene3D Fumarase/aspartase (Central domain) 232 678 - -
Vifa1g03806 683 CDD PAL-HAL 42 494 IPR001106 -
Vifa1g03806 683 PANTHER HISTIDINE AMMONIA-LYASE 16 53 IPR001106 -
Vifa1g03806 683 SUPERFAMILY L-aspartase-like 19 683 IPR008948 GO:0003824
Vifa1g03806 683 Gene3D - 497 618 IPR023144 -
Vifa1g03806 683 NCBIfam phenylalanine ammonia-lyase 53 673 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vifa1g03806 683 Gene3D - 12 231 IPR024083 -
Vifa1g03806 683 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 167 183 IPR022313 GO:0016841
Vifa1g03806 683 Pfam Aromatic amino acid lyase 42 496 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03806 Vifa-Chr1 586296470 586298680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03806 11 683 Monolignol Biosynthesis Gene Families AT2G37040 69.671 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03806 K10775 - gmx:100787872 1164.44