Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03804 ATGAAATTATTACTGAGAAGTGAAGTTGGTGAATTCACAAGCTTAGAGTATCTTATTTTGCAATCAAACTTCTTTAATGGAACAATACCATATACTTTGGCTTCTCTCAAAGGCGAGGTACCAATAGATGGTGTCTTTGGAAATGCTTCACAAGTAGCAATTATTGGAAACAATAAACTTTGTGGAGGTATTTCACAGCTTCATCTACCACCATGCCCTATCAAGGGAAATCTTTTGTCAGAAGATAGTGTTGTTGCCGTAAAGGTCTCGGACCTCCAAAAGAAGGGAGCTCACAAGAGTTTTGTTGCTGAATGTAATGCACTCAAAAACTTAAGACATCAAAATTTAGTTAAGATTTTAACATGTTGTGTTAGTACAGATTCCAAAGTTCAAGAATATAAAGCTTTAGTATTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCTCGCAATTCTAAATGTTGAGCATCCACCAAAATTGAACCTTGGTCAAATATTAAACATCATTATTGATGTTGCATCTGCATTACAATATCTGCATCAAGAATGTGAGCAAGTAGTCATTCATTCTGATCTAAAGCCAAGCAATGTTCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAGCCTTTGATGGTACCTCTCATAAGAATACTAGTATAGTTGGAATAAAAGGGACAGTTCTCTATACTCTTCCAGAGTATGGAATCGATTCTGAAGTGTCCACATGCGGTGACATGTATAGCTTTGGAATCCTTTTGTTTTAA 801 0.3596 MKLLLRSEVGEFTSLEYLILQSNFFNGTIPYTLASLKGEVPIDGVFGNASQVAIIGNNKLCGGISQLHLPPCPIKGNLLSEDSVVAVKVSDLQKKGAHKSFVAECNALKNLRHQNLVKILTCCVSTDSKVQEYKALVFDYMKNGSLEQWLHLAILNVEHPPKLNLGQILNIIIDVASALQYLHQECEQVVIHSDLKPSNVLLDDDMVAHVSDFGIARLVSAFDGTSHKNTSIVGIKGTVLYTLPEYGIDSEVSTCGDMYSFGILLF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03804 266 Pfam Protein tyrosine and serine/threonine kinase 81 266 IPR001245 GO:0004672|GO:0006468
Vifa1g03804 266 ProSiteProfiles Protein kinase domain profile. 35 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03804 266 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vifa1g03804 266 SUPERFAMILY Protein kinase-like (PK-like) 81 266 IPR011009 -
Vifa1g03804 266 Gene3D Phosphorylase Kinase; domain 1 75 144 - -
Vifa1g03804 266 FunFam Os07g0541700 protein 141 235 - -
Vifa1g03804 266 SMART serkin_6 74 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03804 266 Gene3D Transferase(Phosphotransferase) domain 1 145 266 - -
Vifa1g03804 266 Gene3D Ribonuclease Inhibitor 4 74 IPR032675 -
Vifa1g03804 266 PANTHER OS04G0122200 PROTEIN 35 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03804 Vifa-Chr1 586021660 586024935 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03804 12 94 Receptor kinase-like Gene Family AT3G47570 42.169 1.03e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g03804 PK_Tyr_Ser-Thr 1.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03804 - - mtr:11405832 299.671