Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g03801 ATGAAGCCCTGTTCTTTCTTGGCATCTATACTTTTCTACCTTCAGCTTCTTTTTTTGCTTACTTTATGTTTAATGTGGTTTGGTCCTAACAAAATTGTGGCAGTGGCTTTGGGAAACCAAACAGATCATTTGGCATTGCTCAAATTCAAAGAATCAATATCTAGTTATCCATATGGAACTCTTGAATCTTGGAATACTTCCATTCACTTCTGCAAGTGGCATGGAATCACATGCAGCCCCATGCATCAAAGAGTTATAGAGCTGAACTTAGGAGGATATCAGTTACATGGATCTCTATCTCCTCATGTGGGCAATCTCTCTTTTCTGATCAAACTCAACCTTAGCCGCAACAACTTCATTGGAGAAATACCACAGGAGTTGGGTCAGTTGATACAATTGCAACAACTTCATCTTTTCTATAACTCGTTTACGGGTGAAATTCCTACAAACTTAACATATTGCTCCAATCTCAAAGGCTTGTTTTTGGGAGGGAACAACTTGACTGGAAAAATACCAATTGAAATTGGCTCTTTGAAAAAGCTTCAAGTATTCAGCCTTGGGAAAAATAATTTAACCGGAGGAATCCCTTCATTCATAGGGAATCTTTCACACTTAAAAGTTTTAGTATTTGACTATAACAACTTTGCGGGACATATTTCAGAACAAGTATGTCGCCTCACAAACGTGTCACTTTTAAGTTGGGGTGAGAACAATTTATCTGGTACGATTCCTTCTTGTCTTTACAATATCTCGTCAATTGGTTGGCTGTTAACAGCAGCGAATAATTTTCATGGCTCTCTTCCACCTAATATGTTCCACACACTTCCAAATCTCATACAATTTCAAATCGGTGGGAATCAAATCTCTGGCACTATTCCAACTTCAATTATAAATTCATCTTCCTTGGTATATATTGATATCAGTCAAAATTCTTTTGTTGGACAAGTTCCAAATCTCGAAAGGCTAAAAGATTTGCAATATTTGAATTTGGAACTCAATATTTTAGGTAGCAATTCAACTAATGATTTGGATTTTTTAAAATCTTTGACAAACTGTAGTAGATTGTTTCTGCTTTCTATATCCTATAATAATTTTGGTGGCATTCTGCCAAATGCCATAGGCAATTTATCCACTGAACTCAATAGACTACTTCTTGGGTTTAACCAGATAACAGGAAAAATTCCTGCAGAGTTAGGACATCTAGTTGGCTTAATTGCCTTGACCATGCCATTCAACCACTTTGAAGGAATGATTCCAACTACTTTTGGGAAGTTCCAAAAGATGCAACGATTAGAATTGGTTGGAAACAAGCTGTTAGGAAATATACCACCCTTTATAGGTAATCTTAGTCGATTGTATTATTTGGATATACATCTTAATATGTTTGACGGAAATATTCCTCCAAGTATAGAAAACTGCCAACAATTACAATATCTAGATTTTTCACAGAATCAGCTTAGAGGAACCATACCTTTAGAGGTTTTTAAGCTTTCTTCTTTATCAATCTTGTTGAATTTGTCACATAACTTTTTGAGTGGAATCTTACCAAAAGAAGTTGGCATGCTTAAAAATATTGGTTTGTTGGATGTCTCTGAGAATCATCTATCTGGAGATATTCCTACAACAATTGGTGAATGCTCAAGCTTAGAATATATTCTTTTGCAATCAAACTTCTTTAATGGAACAATACCATCTACTTTGGCTTCTCTCAAAGGTCTTCGGTATTTAGACCTTTCAAGAAATCGTTTGACAGGATCAATTCTTGATGTTATGCAAAATTTCTCAGTTTTGAAACATTTAAATGTTTCTTTTAACATGTTGGAAGGCGAGGTACCAATAGATGGTGTCTTTGGAAATGCTTCTCAAGTAGCAATTATTGGAAACAATAAACTTTGTGGAGGTATTTCACAGCTGCATCTACAACCATGCCCTATAAAAGGTAGGAGACAGGAAAACCACCATAAATTCAAGTTGGTAGCACTGATAGTCAGTGGAGTTTGTTTTATTCTCATACTTTCATTCACTATAACTATCTACTGGATGAGGAAAAGAAATAAAAAACAATCTTCTGATTCACCATCAATTGATCAACTAGCTAAGGTTTCATACCAAGACTTGCATCGAGGAACTAATGGTTTCTCGACTGAAAACTTGATCGGTTCAGGAAGTTTTGGTTCTGTGTATAAAGGAAATCTTTTGTCAGAAGATAGTGTTGTTGCCGTAAAGGTCCTGAACCTCCAAAATAAGGGAGCTCACAAGAGTTTCGTTGTTGAATGTAACGCACTCAAAAGCATAAGGCATCGAAATGTAGTCAAGATTTTAACATGTTGTGTTAGTACGGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCCGGAATTCTCAATGTTGAGCATCCAACACCATTGAACCTTGGTCTTAGATTAAACATCATTATCGATGTTGCGTCTGCATTACAATATCTTCATCAAGAATGTGAACAACTGGTCATTCATTCTGATTTAAAGCCAAGCAACGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATTTCAAGACTTGTCTCAGCCATTGGTGTTACCTCTCATAAGAATACTAGTACAATTGTATTTAAAGGAACAGTTGGTTATACTCCTCCAGAGTACGGAATGGGTTCTGAAGTATCCACATGCGGTGACATGTATAGCTTTGGAATCCTTCTGTTGGAAATTTTTACCGGTAGAAGACCCACCGATGAAGCTTTTGAAAATGGTCAAAATCTGCATAACTTTGTTGCAAGATCATTTCCTGATAATCTTAGAGATATTTTGGACCCGTGTCTTGTACCTAGACATGGAGAAGTTGAAGTAGAAGATGGAAATCGTGAGAATCTTGCTCTAAATGTAAAAGAGGGCTTAGTTTCACTCTTTAGGGTTGGACTTACTTGTTCAATGGAATCACCAAAAGAAAGAATGAATATTGTTGATGTCACTAGAGAGCTAATCACAATCAAAAAGACCTTTTTCACTGGTAAGATATTTGATTGTTAA 3084 0.3606 MKPCSFLASILFYLQLLFLLTLCLMWFGPNKIVAVALGNQTDHLALLKFKESISSYPYGTLESWNTSIHFCKWHGITCSPMHQRVIELNLGGYQLHGSLSPHVGNLSFLIKLNLSRNNFIGEIPQELGQLIQLQQLHLFYNSFTGEIPTNLTYCSNLKGLFLGGNNLTGKIPIEIGSLKKLQVFSLGKNNLTGGIPSFIGNLSHLKVLVFDYNNFAGHISEQVCRLTNVSLLSWGENNLSGTIPSCLYNISSIGWLLTAANNFHGSLPPNMFHTLPNLIQFQIGGNQISGTIPTSIINSSSLVYIDISQNSFVGQVPNLERLKDLQYLNLELNILGSNSTNDLDFLKSLTNCSRLFLLSISYNNFGGILPNAIGNLSTELNRLLLGFNQITGKIPAELGHLVGLIALTMPFNHFEGMIPTTFGKFQKMQRLELVGNKLLGNIPPFIGNLSRLYYLDIHLNMFDGNIPPSIENCQQLQYLDFSQNQLRGTIPLEVFKLSSLSILLNLSHNFLSGILPKEVGMLKNIGLLDVSENHLSGDIPTTIGECSSLEYILLQSNFFNGTIPSTLASLKGLRYLDLSRNRLTGSILDVMQNFSVLKHLNVSFNMLEGEVPIDGVFGNASQVAIIGNNKLCGGISQLHLQPCPIKGRRQENHHKFKLVALIVSGVCFILILSFTITIYWMRKRNKKQSSDSPSIDQLAKVSYQDLHRGTNGFSTENLIGSGSFGSVYKGNLLSEDSVVAVKVLNLQNKGAHKSFVVECNALKSIRHRNVVKILTCCVSTDYKGQEFKALVFDYMKNGSLEQWLHPGILNVEHPTPLNLGLRLNIIIDVASALQYLHQECEQLVIHSDLKPSNVLLDDDMVAHVSDFGISRLVSAIGVTSHKNTSTIVFKGTVGYTPPEYGMGSEVSTCGDMYSFGILLLEIFTGRRPTDEAFENGQNLHNFVARSFPDNLRDILDPCLVPRHGEVEVEDGNRENLALNVKEGLVSLFRVGLTCSMESPKERMNIVDVTRELITIKKTFFTGKIFDC 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g03801 1027 SUPERFAMILY L domain-like 380 633 - -
Vifa1g03801 1027 Gene3D Phosphorylase Kinase; domain 1 675 794 - -
Vifa1g03801 1027 SUPERFAMILY L domain-like 40 334 - -
Vifa1g03801 1027 FunFam LRR receptor-like serine/threonine-protein kinase EFR 683 794 - -
Vifa1g03801 1027 FunFam Inactive leucine-rich repeat receptor-like protein kinase 350 643 - -
Vifa1g03801 1027 CDD STKc_IRAK 719 1012 - -
Vifa1g03801 1027 Pfam Protein kinase domain 714 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03801 1027 Gene3D Ribonuclease Inhibitor 320 652 IPR032675 -
Vifa1g03801 1027 PANTHER OS04G0122200 PROTEIN 117 223 - -
Vifa1g03801 1027 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 41 152 - -
Vifa1g03801 1027 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 795 1023 - -
Vifa1g03801 1027 ProSiteProfiles Protein kinase domain profile. 713 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03801 1027 Pfam Leucine rich repeat 548 607 IPR001611 GO:0005515
Vifa1g03801 1027 SUPERFAMILY Protein kinase-like (PK-like) 686 1012 IPR011009 -
Vifa1g03801 1027 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 160 349 - -
Vifa1g03801 1027 Gene3D Transferase(Phosphotransferase) domain 1 795 1022 - -
Vifa1g03801 1027 ProSitePatterns Protein kinases ATP-binding region signature. 719 742 IPR017441 GO:0005524
Vifa1g03801 1027 SMART serkin_6 713 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g03801 1027 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Vifa1g03801 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Vifa1g03801 1027 Gene3D Ribonuclease Inhibitor 39 319 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g03801 Vifa-Chr1 585863077 585866274 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g03801 39 1020 Receptor kinase-like Gene Family AT3G47570 44.713 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g03801 Pkinase 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g03801 - - gmx:100801459 1266.91